Hb_006889_010

Information

Type -
Description -
Location Contig6889: 3034-4356
Sequence    

Annotation

kegg
ID sot:102595755
description agmatine coumaroyltransferase-2-like
nr
ID XP_012064646.1
description PREDICTED: agmatine coumaroyltransferase-2-like [Jatropha curcas]
swissprot
ID A9ZPJ7
description Agmatine coumaroyltransferase-2 OS=Hordeum vulgare GN=ACT-2 PE=1 SV=1
trembl
ID A0A067L631
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05393 PE=4 SV=1
Gene Ontology
ID GO:0047672
description agmatine coumaroyltransferase-2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 014_G13.ab1: 2944-3753

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006889_010 0.0 - - PREDICTED: agmatine coumaroyltransferase-2-like [Jatropha curcas]
2 Hb_006970_180 0.0631885453 - - PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Jatropha curcas]
3 Hb_003152_010 0.0654234963 - - -
4 Hb_005539_330 0.0698131047 - - PREDICTED: WAT1-related protein At2g39510-like [Jatropha curcas]
5 Hb_151436_010 0.0699224245 - - PREDICTED: uncharacterized protein LOC105137019 [Populus euphratica]
6 Hb_085158_010 0.0701813999 transcription factor TF Family: C2H2 TRANSPARENT TESTA 1 protein, putative [Ricinus communis]
7 Hb_006603_010 0.070523777 - - neutral alpha-glucosidase ab precursor, putative [Ricinus communis]
8 Hb_000012_340 0.0778774082 - - PREDICTED: inorganic pyrophosphatase 3-like [Jatropha curcas]
9 Hb_000431_050 0.0788119854 - - conserved hypothetical protein [Ricinus communis]
10 Hb_006846_050 0.0805204667 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
11 Hb_001634_050 0.0835976839 - - PREDICTED: fasciclin-like arabinogalactan protein 12 [Jatropha curcas]
12 Hb_005396_020 0.0887230264 - - hypothetical protein CICLE_v10033278mg [Citrus clementina]
13 Hb_015183_090 0.0893674035 - - PREDICTED: 3-ketoacyl-CoA synthase 21-like [Jatropha curcas]
14 Hb_022250_140 0.0897402792 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
15 Hb_006570_170 0.0910604663 - - Gibberellin-regulated protein 1 precursor, putative [Ricinus communis]
16 Hb_001157_120 0.092120721 - - PREDICTED: dirigent protein 19-like [Jatropha curcas]
17 Hb_002073_210 0.0926260386 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003060_020 0.0948902332 - - serine carboxypeptidase, putative [Ricinus communis]
19 Hb_000083_260 0.0951067912 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003528_090 0.0959048327 - - Uncharacterized protein TCM_037169 [Theobroma cacao]

Gene co-expression network

sample Hb_006889_010 Hb_006889_010 Hb_006970_180 Hb_006970_180 Hb_006889_010--Hb_006970_180 Hb_003152_010 Hb_003152_010 Hb_006889_010--Hb_003152_010 Hb_005539_330 Hb_005539_330 Hb_006889_010--Hb_005539_330 Hb_151436_010 Hb_151436_010 Hb_006889_010--Hb_151436_010 Hb_085158_010 Hb_085158_010 Hb_006889_010--Hb_085158_010 Hb_006603_010 Hb_006603_010 Hb_006889_010--Hb_006603_010 Hb_006970_180--Hb_151436_010 Hb_022250_140 Hb_022250_140 Hb_006970_180--Hb_022250_140 Hb_006970_180--Hb_085158_010 Hb_000431_050 Hb_000431_050 Hb_006970_180--Hb_000431_050 Hb_006970_180--Hb_006603_010 Hb_002073_210 Hb_002073_210 Hb_006970_180--Hb_002073_210 Hb_000352_210 Hb_000352_210 Hb_003152_010--Hb_000352_210 Hb_003152_010--Hb_006970_180 Hb_003152_010--Hb_002073_210 Hb_003152_010--Hb_151436_010 Hb_003152_010--Hb_000431_050 Hb_000012_340 Hb_000012_340 Hb_005539_330--Hb_000012_340 Hb_005539_330--Hb_085158_010 Hb_000429_070 Hb_000429_070 Hb_005539_330--Hb_000429_070 Hb_005539_330--Hb_000431_050 Hb_005539_330--Hb_006603_010 Hb_151436_010--Hb_000431_050 Hb_151436_010--Hb_085158_010 Hb_151436_010--Hb_002073_210 Hb_151436_010--Hb_022250_140 Hb_151436_010--Hb_006603_010 Hb_085158_010--Hb_000431_050 Hb_006846_050 Hb_006846_050 Hb_085158_010--Hb_006846_050 Hb_085158_010--Hb_006603_010 Hb_006603_010--Hb_006846_050 Hb_006618_060 Hb_006618_060 Hb_006603_010--Hb_006618_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0158418 0.186929 0.717034 13.4041 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.102321 0.650506

CAGE analysis