Hb_003152_010

Information

Type -
Description -
Location Contig3152: 12284-13020
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003152_010 0.0 - - -
2 Hb_006889_010 0.0654234963 - - PREDICTED: agmatine coumaroyltransferase-2-like [Jatropha curcas]
3 Hb_000352_210 0.0689197361 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase 1 [Jatropha curcas]
4 Hb_006970_180 0.0694890089 - - PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Jatropha curcas]
5 Hb_002073_210 0.0707288097 - - conserved hypothetical protein [Ricinus communis]
6 Hb_151436_010 0.0733535606 - - PREDICTED: uncharacterized protein LOC105137019 [Populus euphratica]
7 Hb_000431_050 0.0752964131 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004732_080 0.0770672915 - - PREDICTED: germin-like protein subfamily 3 member 2 [Populus euphratica]
9 Hb_015183_090 0.0793428898 - - PREDICTED: 3-ketoacyl-CoA synthase 21-like [Jatropha curcas]
10 Hb_000331_380 0.0799277325 - - hypothetical protein POPTR_0012s09560g [Populus trichocarpa]
11 Hb_006603_010 0.0866855864 - - neutral alpha-glucosidase ab precursor, putative [Ricinus communis]
12 Hb_085158_010 0.0877036412 transcription factor TF Family: C2H2 TRANSPARENT TESTA 1 protein, putative [Ricinus communis]
13 Hb_014834_100 0.0885220341 - - PREDICTED: probable aquaporin TIP-type [Gossypium raimondii]
14 Hb_000731_180 0.0890290636 - - hypothetical protein POPTR_0004s01820g [Populus trichocarpa]
15 Hb_001557_030 0.0898020274 - - hypothetical protein CICLE_v10005306mg [Citrus clementina]
16 Hb_022250_140 0.0919495572 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
17 Hb_001433_230 0.0948029563 - - PREDICTED: kinesin-4-like [Jatropha curcas]
18 Hb_007292_060 0.0959566703 - - PREDICTED: uncharacterized protein LOC105632853 [Jatropha curcas]
19 Hb_000964_120 0.0962992439 - - DNA-damage-inducible protein f, putative [Ricinus communis]
20 Hb_004396_020 0.0974760819 - - SAUR-like auxin-responsive protein family [Theobroma cacao]

Gene co-expression network

sample Hb_003152_010 Hb_003152_010 Hb_006889_010 Hb_006889_010 Hb_003152_010--Hb_006889_010 Hb_000352_210 Hb_000352_210 Hb_003152_010--Hb_000352_210 Hb_006970_180 Hb_006970_180 Hb_003152_010--Hb_006970_180 Hb_002073_210 Hb_002073_210 Hb_003152_010--Hb_002073_210 Hb_151436_010 Hb_151436_010 Hb_003152_010--Hb_151436_010 Hb_000431_050 Hb_000431_050 Hb_003152_010--Hb_000431_050 Hb_006889_010--Hb_006970_180 Hb_005539_330 Hb_005539_330 Hb_006889_010--Hb_005539_330 Hb_006889_010--Hb_151436_010 Hb_085158_010 Hb_085158_010 Hb_006889_010--Hb_085158_010 Hb_006603_010 Hb_006603_010 Hb_006889_010--Hb_006603_010 Hb_000331_380 Hb_000331_380 Hb_000352_210--Hb_000331_380 Hb_000392_080 Hb_000392_080 Hb_000352_210--Hb_000392_080 Hb_000352_210--Hb_000431_050 Hb_004396_020 Hb_004396_020 Hb_000352_210--Hb_004396_020 Hb_000352_210--Hb_002073_210 Hb_006970_180--Hb_151436_010 Hb_022250_140 Hb_022250_140 Hb_006970_180--Hb_022250_140 Hb_006970_180--Hb_085158_010 Hb_006970_180--Hb_000431_050 Hb_006970_180--Hb_006603_010 Hb_006970_180--Hb_002073_210 Hb_002073_210--Hb_151436_010 Hb_002073_210--Hb_000331_380 Hb_002073_210--Hb_000431_050 Hb_002073_210--Hb_022250_140 Hb_151436_010--Hb_000431_050 Hb_151436_010--Hb_085158_010 Hb_151436_010--Hb_022250_140 Hb_151436_010--Hb_006603_010 Hb_000431_050--Hb_085158_010 Hb_000431_050--Hb_000331_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.477908 7.72081 91.252 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.860092 5.401

CAGE analysis