Hb_000392_080

Information

Type -
Description -
Location Contig392: 50567-51492
Sequence    

Annotation

kegg
ID rcu:RCOM_1472390
description hypothetical protein
nr
ID KHN30841.1
description hypothetical protein glysoja_034865 [Glycine soja]
swissprot
ID -
description -
trembl
ID A0A0B2R8K8
description Uncharacterized protein OS=Glycine soja GN=glysoja_034865 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39242: 50489-51598 , PASA_asmbl_39243: 51155-51399
cDNA
(Sanger)
(ID:Location)		 023_K23.ab1: 50489-51500

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000392_080 0.0 - - hypothetical protein glysoja_034865 [Glycine soja]
2 Hb_000352_210 0.0518132612 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase 1 [Jatropha curcas]
3 Hb_004396_020 0.0557758848 - - SAUR-like auxin-responsive protein family [Theobroma cacao]
4 Hb_000331_380 0.0595098627 - - hypothetical protein POPTR_0012s09560g [Populus trichocarpa]
5 Hb_010327_040 0.0703815381 - - hypothetical protein POPTR_0004s17300g [Populus trichocarpa]
6 Hb_002757_020 0.0747504591 - - -
7 Hb_024066_020 0.0809611501 - - P66 protein [Hevea brasiliensis]
8 Hb_007007_140 0.0816561698 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL6 [Jatropha curcas]
9 Hb_000431_050 0.0824447699 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004732_080 0.0856519187 - - PREDICTED: germin-like protein subfamily 3 member 2 [Populus euphratica]
11 Hb_003152_010 0.1014607843 - - -
12 Hb_002073_210 0.102195426 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000802_040 0.1028627734 - - PREDICTED: probable inositol transporter 2 [Jatropha curcas]
14 Hb_085158_010 0.1028950829 transcription factor TF Family: C2H2 TRANSPARENT TESTA 1 protein, putative [Ricinus communis]
15 Hb_151436_010 0.103037952 - - PREDICTED: uncharacterized protein LOC105137019 [Populus euphratica]
16 Hb_000375_210 0.1047364546 - - -
17 Hb_002028_250 0.1049522583 - - Alpha-aminoadipic semialdehyde synthase, mitochondrial [Crassostrea gigas]
18 Hb_015183_090 0.1082025636 - - PREDICTED: 3-ketoacyl-CoA synthase 21-like [Jatropha curcas]
19 Hb_006970_180 0.1082581255 - - PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Jatropha curcas]
20 Hb_014508_020 0.1087656877 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000392_080 Hb_000392_080 Hb_000352_210 Hb_000352_210 Hb_000392_080--Hb_000352_210 Hb_004396_020 Hb_004396_020 Hb_000392_080--Hb_004396_020 Hb_000331_380 Hb_000331_380 Hb_000392_080--Hb_000331_380 Hb_010327_040 Hb_010327_040 Hb_000392_080--Hb_010327_040 Hb_002757_020 Hb_002757_020 Hb_000392_080--Hb_002757_020 Hb_024066_020 Hb_024066_020 Hb_000392_080--Hb_024066_020 Hb_000352_210--Hb_000331_380 Hb_000431_050 Hb_000431_050 Hb_000352_210--Hb_000431_050 Hb_000352_210--Hb_004396_020 Hb_002073_210 Hb_002073_210 Hb_000352_210--Hb_002073_210 Hb_003152_010 Hb_003152_010 Hb_000352_210--Hb_003152_010 Hb_007007_140 Hb_007007_140 Hb_004396_020--Hb_007007_140 Hb_004396_020--Hb_024066_020 Hb_004732_080 Hb_004732_080 Hb_004396_020--Hb_004732_080 Hb_004396_020--Hb_010327_040 Hb_004396_020--Hb_000331_380 Hb_000331_380--Hb_000431_050 Hb_000331_380--Hb_002073_210 Hb_000331_380--Hb_007007_140 Hb_000802_040 Hb_000802_040 Hb_010327_040--Hb_000802_040 Hb_010327_040--Hb_024066_020 Hb_010327_040--Hb_007007_140 Hb_004693_040 Hb_004693_040 Hb_010327_040--Hb_004693_040 Hb_000375_210 Hb_000375_210 Hb_002757_020--Hb_000375_210 Hb_002028_250 Hb_002028_250 Hb_002757_020--Hb_002028_250 Hb_000389_120 Hb_000389_120 Hb_002757_020--Hb_000389_120 Hb_014508_020 Hb_014508_020 Hb_002757_020--Hb_014508_020 Hb_000431_040 Hb_000431_040 Hb_002757_020--Hb_000431_040 Hb_005914_190 Hb_005914_190 Hb_002757_020--Hb_005914_190 Hb_024066_020--Hb_007007_140 Hb_024066_020--Hb_004732_080 Hb_002308_040 Hb_002308_040 Hb_024066_020--Hb_002308_040 Hb_024066_020--Hb_004693_040 Hb_002471_310 Hb_002471_310 Hb_024066_020--Hb_002471_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 26.1662 224.091 0 0.08917
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 7.61004

CAGE analysis