Hb_000431_050

Information

Type -
Description -
Location Contig431: 91659-91859
Sequence    

Annotation

kegg
ID rcu:RCOM_0091230
description hypothetical protein
nr
ID XP_002526737.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SL68
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0091230 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42215: 91193-91937
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000431_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_085158_010 0.0290338943 transcription factor TF Family: C2H2 TRANSPARENT TESTA 1 protein, putative [Ricinus communis]
3 Hb_151436_010 0.0441278266 - - PREDICTED: uncharacterized protein LOC105137019 [Populus euphratica]
4 Hb_000331_380 0.0563498834 - - hypothetical protein POPTR_0012s09560g [Populus trichocarpa]
5 Hb_006970_180 0.0570233935 - - PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Jatropha curcas]
6 Hb_002073_210 0.0590168964 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000352_210 0.0592784675 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase 1 [Jatropha curcas]
8 Hb_003152_010 0.0752964131 - - -
9 Hb_004162_150 0.0766707875 - - hypothetical protein POPTR_0009s00870g [Populus trichocarpa]
10 Hb_015183_090 0.0768687401 - - PREDICTED: 3-ketoacyl-CoA synthase 21-like [Jatropha curcas]
11 Hb_006889_010 0.0788119854 - - PREDICTED: agmatine coumaroyltransferase-2-like [Jatropha curcas]
12 Hb_006846_050 0.0810218791 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
13 Hb_006603_010 0.0810920176 - - neutral alpha-glucosidase ab precursor, putative [Ricinus communis]
14 Hb_000392_080 0.0824447699 - - hypothetical protein glysoja_034865 [Glycine soja]
15 Hb_005539_330 0.0835247376 - - PREDICTED: WAT1-related protein At2g39510-like [Jatropha curcas]
16 Hb_000431_040 0.0906663313 - - PREDICTED: uncharacterized protein LOC105635551 [Jatropha curcas]
17 Hb_000307_160 0.0934238893 - - PREDICTED: uncharacterized protein At1g76070 [Jatropha curcas]
18 Hb_001634_050 0.0957214465 - - PREDICTED: fasciclin-like arabinogalactan protein 12 [Jatropha curcas]
19 Hb_002757_020 0.096692843 - - -
20 Hb_022250_140 0.0987192395 - - Rhicadhesin receptor precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000431_050 Hb_000431_050 Hb_085158_010 Hb_085158_010 Hb_000431_050--Hb_085158_010 Hb_151436_010 Hb_151436_010 Hb_000431_050--Hb_151436_010 Hb_000331_380 Hb_000331_380 Hb_000431_050--Hb_000331_380 Hb_006970_180 Hb_006970_180 Hb_000431_050--Hb_006970_180 Hb_002073_210 Hb_002073_210 Hb_000431_050--Hb_002073_210 Hb_000352_210 Hb_000352_210 Hb_000431_050--Hb_000352_210 Hb_085158_010--Hb_151436_010 Hb_085158_010--Hb_006970_180 Hb_006846_050 Hb_006846_050 Hb_085158_010--Hb_006846_050 Hb_006603_010 Hb_006603_010 Hb_085158_010--Hb_006603_010 Hb_006889_010 Hb_006889_010 Hb_085158_010--Hb_006889_010 Hb_151436_010--Hb_006970_180 Hb_151436_010--Hb_002073_210 Hb_022250_140 Hb_022250_140 Hb_151436_010--Hb_022250_140 Hb_151436_010--Hb_006603_010 Hb_000331_380--Hb_000352_210 Hb_000331_380--Hb_002073_210 Hb_004396_020 Hb_004396_020 Hb_000331_380--Hb_004396_020 Hb_000392_080 Hb_000392_080 Hb_000331_380--Hb_000392_080 Hb_007007_140 Hb_007007_140 Hb_000331_380--Hb_007007_140 Hb_006970_180--Hb_022250_140 Hb_006970_180--Hb_006603_010 Hb_006970_180--Hb_002073_210 Hb_002073_210--Hb_022250_140 Hb_002073_210--Hb_000352_210 Hb_000352_210--Hb_000392_080 Hb_000352_210--Hb_004396_020 Hb_003152_010 Hb_003152_010 Hb_000352_210--Hb_003152_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.19038 48.5804 743.836 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 31.0329

CAGE analysis