Hb_006970_180

Information

Type -
Description -
Location Contig6970: 152352-156106
Sequence    

Annotation

kegg
ID rcu:RCOM_1577240
description serine-threonine protein kinase, plant-type, putative (EC:1.3.1.74)
nr
ID XP_012092766.1
description PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Jatropha curcas]
swissprot
ID Q00874
description DNA-damage-repair/toleration protein DRT100 OS=Arabidopsis thaliana GN=DRT100 PE=2 SV=2
trembl
ID B9RI89
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1577240 PE=4 SV=1
Gene Ontology
ID GO:0016301
description dna-damage-repair toleration protein drt100-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006970_180 0.0 - - PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Jatropha curcas]
2 Hb_151436_010 0.0253851344 - - PREDICTED: uncharacterized protein LOC105137019 [Populus euphratica]
3 Hb_022250_140 0.0543142749 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
4 Hb_085158_010 0.0544977348 transcription factor TF Family: C2H2 TRANSPARENT TESTA 1 protein, putative [Ricinus communis]
5 Hb_000431_050 0.0570233935 - - conserved hypothetical protein [Ricinus communis]
6 Hb_006603_010 0.0577554555 - - neutral alpha-glucosidase ab precursor, putative [Ricinus communis]
7 Hb_002073_210 0.058412511 - - conserved hypothetical protein [Ricinus communis]
8 Hb_006889_010 0.0631885453 - - PREDICTED: agmatine coumaroyltransferase-2-like [Jatropha curcas]
9 Hb_003152_010 0.0694890089 - - -
10 Hb_006570_170 0.0744007988 - - Gibberellin-regulated protein 1 precursor, putative [Ricinus communis]
11 Hb_006846_050 0.0757645372 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
12 Hb_001634_050 0.0776145947 - - PREDICTED: fasciclin-like arabinogalactan protein 12 [Jatropha curcas]
13 Hb_000352_210 0.0807378312 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase 1 [Jatropha curcas]
14 Hb_006816_060 0.0825165865 - - PREDICTED: phospholipid-metabolizing enzyme A-C1-like [Jatropha curcas]
15 Hb_000331_380 0.0858347503 - - hypothetical protein POPTR_0012s09560g [Populus trichocarpa]
16 Hb_025557_090 0.0860536621 - - hypothetical protein glysoja_034865 [Glycine soja]
17 Hb_005539_330 0.0908191069 - - PREDICTED: WAT1-related protein At2g39510-like [Jatropha curcas]
18 Hb_004732_080 0.0925045881 - - PREDICTED: germin-like protein subfamily 3 member 2 [Populus euphratica]
19 Hb_005396_020 0.0925396633 - - hypothetical protein CICLE_v10033278mg [Citrus clementina]
20 Hb_001433_230 0.0931818547 - - PREDICTED: kinesin-4-like [Jatropha curcas]

Gene co-expression network

sample Hb_006970_180 Hb_006970_180 Hb_151436_010 Hb_151436_010 Hb_006970_180--Hb_151436_010 Hb_022250_140 Hb_022250_140 Hb_006970_180--Hb_022250_140 Hb_085158_010 Hb_085158_010 Hb_006970_180--Hb_085158_010 Hb_000431_050 Hb_000431_050 Hb_006970_180--Hb_000431_050 Hb_006603_010 Hb_006603_010 Hb_006970_180--Hb_006603_010 Hb_002073_210 Hb_002073_210 Hb_006970_180--Hb_002073_210 Hb_151436_010--Hb_000431_050 Hb_151436_010--Hb_085158_010 Hb_151436_010--Hb_002073_210 Hb_151436_010--Hb_022250_140 Hb_151436_010--Hb_006603_010 Hb_006570_170 Hb_006570_170 Hb_022250_140--Hb_006570_170 Hb_006816_060 Hb_006816_060 Hb_022250_140--Hb_006816_060 Hb_001634_050 Hb_001634_050 Hb_022250_140--Hb_001634_050 Hb_022250_140--Hb_002073_210 Hb_085158_010--Hb_000431_050 Hb_006846_050 Hb_006846_050 Hb_085158_010--Hb_006846_050 Hb_085158_010--Hb_006603_010 Hb_006889_010 Hb_006889_010 Hb_085158_010--Hb_006889_010 Hb_000331_380 Hb_000331_380 Hb_000431_050--Hb_000331_380 Hb_000431_050--Hb_002073_210 Hb_000352_210 Hb_000352_210 Hb_000431_050--Hb_000352_210 Hb_006603_010--Hb_006846_050 Hb_006618_060 Hb_006618_060 Hb_006603_010--Hb_006618_060 Hb_006603_010--Hb_006889_010 Hb_002073_210--Hb_000331_380 Hb_002073_210--Hb_000352_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.805804 3.93323 53.6899 0 0.0310259
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0387413 3.00726

CAGE analysis