Hb_006570_170

Information

Type -
Description -
Location Contig6570: 97601-98760
Sequence    

Annotation

kegg
ID rcu:RCOM_1597840
description Gibberellin-regulated protein 1 precursor, putative
nr
ID XP_002510530.1
description Gibberellin-regulated protein 1 precursor, putative [Ricinus communis]
swissprot
ID Q93X17
description Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1
trembl
ID B9R887
description Gibberellin-regulated protein 1, putative OS=Ricinus communis GN=RCOM_1597840 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52796: 92417-97203 , PASA_asmbl_52799: 96507-96680
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006570_170 0.0 - - Gibberellin-regulated protein 1 precursor, putative [Ricinus communis]
2 Hb_001634_050 0.0432138859 - - PREDICTED: fasciclin-like arabinogalactan protein 12 [Jatropha curcas]
3 Hb_022250_140 0.0514175108 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
4 Hb_000816_090 0.0521025412 transcription factor TF Family: TRAF protein binding protein, putative [Ricinus communis]
5 Hb_005396_020 0.0587630023 - - hypothetical protein CICLE_v10033278mg [Citrus clementina]
6 Hb_006249_010 0.0589980004 - - hypothetical protein JCGZ_13152 [Jatropha curcas]
7 Hb_012180_070 0.0668178156 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003060_020 0.0674745656 - - serine carboxypeptidase, putative [Ricinus communis]
9 Hb_151436_010 0.0717905099 - - PREDICTED: uncharacterized protein LOC105137019 [Populus euphratica]
10 Hb_006970_180 0.0744007988 - - PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Jatropha curcas]
11 Hb_000318_500 0.0745177637 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002073_210 0.0762334402 - - conserved hypothetical protein [Ricinus communis]
13 Hb_006816_060 0.0791749111 - - PREDICTED: phospholipid-metabolizing enzyme A-C1-like [Jatropha curcas]
14 Hb_000107_240 0.0800757559 - - organic anion transporter, putative [Ricinus communis]
15 Hb_001401_130 0.0858496165 - - Calcium-binding EF-hand family protein, putative [Theobroma cacao]
16 Hb_003528_090 0.0858781275 - - Uncharacterized protein TCM_037169 [Theobroma cacao]
17 Hb_000012_340 0.0901554217 - - PREDICTED: inorganic pyrophosphatase 3-like [Jatropha curcas]
18 Hb_006889_010 0.0910604663 - - PREDICTED: agmatine coumaroyltransferase-2-like [Jatropha curcas]
19 Hb_000327_350 0.0913993677 - - PREDICTED: 3-ketoacyl-CoA synthase 21-like [Jatropha curcas]
20 Hb_000307_160 0.0930987575 - - PREDICTED: uncharacterized protein At1g76070 [Jatropha curcas]

Gene co-expression network

sample Hb_006570_170 Hb_006570_170 Hb_001634_050 Hb_001634_050 Hb_006570_170--Hb_001634_050 Hb_022250_140 Hb_022250_140 Hb_006570_170--Hb_022250_140 Hb_000816_090 Hb_000816_090 Hb_006570_170--Hb_000816_090 Hb_005396_020 Hb_005396_020 Hb_006570_170--Hb_005396_020 Hb_006249_010 Hb_006249_010 Hb_006570_170--Hb_006249_010 Hb_012180_070 Hb_012180_070 Hb_006570_170--Hb_012180_070 Hb_001634_050--Hb_005396_020 Hb_001634_050--Hb_012180_070 Hb_000107_240 Hb_000107_240 Hb_001634_050--Hb_000107_240 Hb_001634_050--Hb_006249_010 Hb_001634_050--Hb_022250_140 Hb_006970_180 Hb_006970_180 Hb_022250_140--Hb_006970_180 Hb_006816_060 Hb_006816_060 Hb_022250_140--Hb_006816_060 Hb_151436_010 Hb_151436_010 Hb_022250_140--Hb_151436_010 Hb_002073_210 Hb_002073_210 Hb_022250_140--Hb_002073_210 Hb_003060_020 Hb_003060_020 Hb_000816_090--Hb_003060_020 Hb_000327_350 Hb_000327_350 Hb_000816_090--Hb_000327_350 Hb_000816_090--Hb_005396_020 Hb_003528_090 Hb_003528_090 Hb_000816_090--Hb_003528_090 Hb_000816_090--Hb_001634_050 Hb_005396_020--Hb_012180_070 Hb_005396_020--Hb_003060_020 Hb_005396_020--Hb_003528_090 Hb_000318_500 Hb_000318_500 Hb_006249_010--Hb_000318_500 Hb_006249_010--Hb_000107_240 Hb_103468_010 Hb_103468_010 Hb_006249_010--Hb_103468_010 Hb_000868_020 Hb_000868_020 Hb_006249_010--Hb_000868_020 Hb_001386_070 Hb_001386_070 Hb_012180_070--Hb_001386_070 Hb_001401_130 Hb_001401_130 Hb_012180_070--Hb_001401_130 Hb_000429_070 Hb_000429_070 Hb_012180_070--Hb_000429_070 Hb_012180_070--Hb_000107_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.24807 0.577274 13.1108 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.18209

CAGE analysis