Hb_003060_020

Information

Type -
Description -
Location Contig3060: 8481-11873
Sequence    

Annotation

kegg
ID rcu:RCOM_0962680
description serine carboxypeptidase, putative (EC:3.4.16.6)
nr
ID XP_002517750.1
description serine carboxypeptidase, putative [Ricinus communis]
swissprot
ID Q0WRX3
description Serine carboxypeptidase-like 40 OS=Arabidopsis thaliana GN=SCPL40 PE=2 SV=2
trembl
ID B9RVI1
description Carboxypeptidase OS=Ricinus communis GN=RCOM_0962680 PE=3 SV=1
Gene Ontology
ID GO:0004185
description serine carboxypeptidase-like 40

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32352: 9050-9237 , PASA_asmbl_32353: 9394-11922 , PASA_asmbl_32354: 9307-9501
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003060_020 0.0 - - serine carboxypeptidase, putative [Ricinus communis]
2 Hb_003528_090 0.0381999 - - Uncharacterized protein TCM_037169 [Theobroma cacao]
3 Hb_000816_090 0.0401616678 transcription factor TF Family: TRAF protein binding protein, putative [Ricinus communis]
4 Hb_000327_350 0.0514264382 - - PREDICTED: 3-ketoacyl-CoA synthase 21-like [Jatropha curcas]
5 Hb_005396_020 0.0557706312 - - hypothetical protein CICLE_v10033278mg [Citrus clementina]
6 Hb_103468_010 0.0565223647 - - protein binding protein, putative [Ricinus communis]
7 Hb_001634_050 0.0664573806 - - PREDICTED: fasciclin-like arabinogalactan protein 12 [Jatropha curcas]
8 Hb_001157_120 0.0672618372 - - PREDICTED: dirigent protein 19-like [Jatropha curcas]
9 Hb_006570_170 0.0674745656 - - Gibberellin-regulated protein 1 precursor, putative [Ricinus communis]
10 Hb_006249_010 0.0763159073 - - hypothetical protein JCGZ_13152 [Jatropha curcas]
11 Hb_022250_140 0.0798602154 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
12 Hb_000318_500 0.0813458244 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000107_240 0.0828811802 - - organic anion transporter, putative [Ricinus communis]
14 Hb_012180_070 0.0834106269 - - conserved hypothetical protein [Ricinus communis]
15 Hb_006816_060 0.0842094047 - - PREDICTED: phospholipid-metabolizing enzyme A-C1-like [Jatropha curcas]
16 Hb_001401_130 0.0853597273 - - Calcium-binding EF-hand family protein, putative [Theobroma cacao]
17 Hb_180518_010 0.0891029561 - - PREDICTED: receptor-like protein 2 [Jatropha curcas]
18 Hb_000244_290 0.0901413514 - - PREDICTED: UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 [Jatropha curcas]
19 Hb_001433_230 0.0901837758 - - PREDICTED: kinesin-4-like [Jatropha curcas]
20 Hb_000521_030 0.0912618943 - - PREDICTED: uncharacterized protein LOC105650350 [Jatropha curcas]

Gene co-expression network

sample Hb_003060_020 Hb_003060_020 Hb_003528_090 Hb_003528_090 Hb_003060_020--Hb_003528_090 Hb_000816_090 Hb_000816_090 Hb_003060_020--Hb_000816_090 Hb_000327_350 Hb_000327_350 Hb_003060_020--Hb_000327_350 Hb_005396_020 Hb_005396_020 Hb_003060_020--Hb_005396_020 Hb_103468_010 Hb_103468_010 Hb_003060_020--Hb_103468_010 Hb_001634_050 Hb_001634_050 Hb_003060_020--Hb_001634_050 Hb_001157_120 Hb_001157_120 Hb_003528_090--Hb_001157_120 Hb_003528_090--Hb_000816_090 Hb_001401_130 Hb_001401_130 Hb_003528_090--Hb_001401_130 Hb_003528_090--Hb_005396_020 Hb_003528_090--Hb_000327_350 Hb_000816_090--Hb_000327_350 Hb_006570_170 Hb_006570_170 Hb_000816_090--Hb_006570_170 Hb_000816_090--Hb_005396_020 Hb_000816_090--Hb_001634_050 Hb_000521_030 Hb_000521_030 Hb_000327_350--Hb_000521_030 Hb_000318_500 Hb_000318_500 Hb_000327_350--Hb_000318_500 Hb_000244_290 Hb_000244_290 Hb_000327_350--Hb_000244_290 Hb_005396_020--Hb_001634_050 Hb_012180_070 Hb_012180_070 Hb_005396_020--Hb_012180_070 Hb_005396_020--Hb_006570_170 Hb_014834_100 Hb_014834_100 Hb_103468_010--Hb_014834_100 Hb_006249_010 Hb_006249_010 Hb_103468_010--Hb_006249_010 Hb_027577_010 Hb_027577_010 Hb_103468_010--Hb_027577_010 Hb_000868_020 Hb_000868_020 Hb_103468_010--Hb_000868_020 Hb_180518_010 Hb_180518_010 Hb_103468_010--Hb_180518_010 Hb_001634_050--Hb_006570_170 Hb_001634_050--Hb_012180_070 Hb_000107_240 Hb_000107_240 Hb_001634_050--Hb_000107_240 Hb_001634_050--Hb_006249_010 Hb_022250_140 Hb_022250_140 Hb_001634_050--Hb_022250_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.25623 0.550063 14.3301 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.127193 1.58985

CAGE analysis