Hb_014834_100

Information

Type -
Description -
Location Contig14834: 70759-71768
Sequence    

Annotation

kegg
ID vvi:100258739
description probable aquaporin TIP-type
nr
ID XP_012472023.1
description PREDICTED: probable aquaporin TIP-type [Gossypium raimondii]
swissprot
ID Q9FGL2
description Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3 PE=1 SV=1
trembl
ID A0A0D2P2Z1
description Gossypium raimondii chromosome 3, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_003G171800 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable aquaporin tip2-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12179: 70701-71735
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014834_100 0.0 - - PREDICTED: probable aquaporin TIP-type [Gossypium raimondii]
2 Hb_001557_030 0.0535257858 - - hypothetical protein CICLE_v10005306mg [Citrus clementina]
3 Hb_103468_010 0.065579592 - - protein binding protein, putative [Ricinus communis]
4 Hb_011224_030 0.0659186383 - - PREDICTED: oligopeptide transporter 1-like isoform X1 [Jatropha curcas]
5 Hb_001433_230 0.0686728178 - - PREDICTED: kinesin-4-like [Jatropha curcas]
6 Hb_150179_010 0.0727834406 - - hypothetical protein JCGZ_21079 [Jatropha curcas]
7 Hb_002073_210 0.082263997 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000731_180 0.083555217 - - hypothetical protein POPTR_0004s01820g [Populus trichocarpa]
9 Hb_177208_010 0.0840519082 transcription factor TF Family: MIKC MADS-box transcription factor, partial [Jatropha sp. CONN 198700232]
10 Hb_022250_140 0.0841630964 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
11 Hb_004732_080 0.0851746206 - - PREDICTED: germin-like protein subfamily 3 member 2 [Populus euphratica]
12 Hb_000997_220 0.085410159 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA14-like [Jatropha curcas]
13 Hb_000227_290 0.0871443732 - - PREDICTED: uncharacterized protein LOC105631957 [Jatropha curcas]
14 Hb_003152_010 0.0885220341 - - -
15 Hb_029584_030 0.0895366118 - - hypothetical protein JCGZ_07310 [Jatropha curcas]
16 Hb_003754_010 0.090195177 - - hypothetical protein POPTR_0019s09950g [Populus trichocarpa]
17 Hb_004957_010 0.0907504434 - - PREDICTED: probable aquaporin NIP-type [Prunus mume]
18 Hb_003685_070 0.0933863385 - - RecName: Full=(S)-hydroxynitrile lyase; AltName: Full=(S)-acetone-cyanohydrin lyase; AltName: Full=Oxynitrilase [Hevea brasiliensis]
19 Hb_006249_010 0.0937503465 - - hypothetical protein JCGZ_13152 [Jatropha curcas]
20 Hb_000664_010 0.094626606 - - PREDICTED: histidine-containing phosphotransfer protein 4-like [Jatropha curcas]

Gene co-expression network

sample Hb_014834_100 Hb_014834_100 Hb_001557_030 Hb_001557_030 Hb_014834_100--Hb_001557_030 Hb_103468_010 Hb_103468_010 Hb_014834_100--Hb_103468_010 Hb_011224_030 Hb_011224_030 Hb_014834_100--Hb_011224_030 Hb_001433_230 Hb_001433_230 Hb_014834_100--Hb_001433_230 Hb_150179_010 Hb_150179_010 Hb_014834_100--Hb_150179_010 Hb_002073_210 Hb_002073_210 Hb_014834_100--Hb_002073_210 Hb_001557_030--Hb_150179_010 Hb_001557_030--Hb_011224_030 Hb_007007_140 Hb_007007_140 Hb_001557_030--Hb_007007_140 Hb_001887_010 Hb_001887_010 Hb_001557_030--Hb_001887_010 Hb_029584_030 Hb_029584_030 Hb_001557_030--Hb_029584_030 Hb_003060_020 Hb_003060_020 Hb_103468_010--Hb_003060_020 Hb_006249_010 Hb_006249_010 Hb_103468_010--Hb_006249_010 Hb_027577_010 Hb_027577_010 Hb_103468_010--Hb_027577_010 Hb_000868_020 Hb_000868_020 Hb_103468_010--Hb_000868_020 Hb_180518_010 Hb_180518_010 Hb_103468_010--Hb_180518_010 Hb_011224_030--Hb_150179_010 Hb_000664_010 Hb_000664_010 Hb_011224_030--Hb_000664_010 Hb_011224_030--Hb_029584_030 Hb_002471_310 Hb_002471_310 Hb_011224_030--Hb_002471_310 Hb_002308_040 Hb_002308_040 Hb_011224_030--Hb_002308_040 Hb_011224_030--Hb_007007_140 Hb_022250_140 Hb_022250_140 Hb_001433_230--Hb_022250_140 Hb_006816_060 Hb_006816_060 Hb_001433_230--Hb_006816_060 Hb_001634_050 Hb_001634_050 Hb_001433_230--Hb_001634_050 Hb_005357_170 Hb_005357_170 Hb_001433_230--Hb_005357_170 Hb_005396_020 Hb_005396_020 Hb_001433_230--Hb_005396_020 Hb_150179_010--Hb_029584_030 Hb_150179_010--Hb_000664_010 Hb_150179_010--Hb_007007_140 Hb_003685_070 Hb_003685_070 Hb_150179_010--Hb_003685_070 Hb_151436_010 Hb_151436_010 Hb_002073_210--Hb_151436_010 Hb_000331_380 Hb_000331_380 Hb_002073_210--Hb_000331_380 Hb_006970_180 Hb_006970_180 Hb_002073_210--Hb_006970_180 Hb_000431_050 Hb_000431_050 Hb_002073_210--Hb_000431_050 Hb_002073_210--Hb_022250_140 Hb_000352_210 Hb_000352_210 Hb_002073_210--Hb_000352_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.138863 2.3725 24.6612 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.163407 3.21399

CAGE analysis