Hb_001887_010

Information

Type -
Description -
Location Contig1887: 49322-51324
Sequence    

Annotation

kegg
ID rcu:RCOM_1326370
description mta/sah nucleosidase, putative
nr
ID XP_002520044.1
description mta/sah nucleosidase, putative [Ricinus communis]
swissprot
ID Q07469
description Bark storage protein A OS=Populus deltoides GN=BSPA PE=2 SV=1
trembl
ID B9S225
description Mta/sah nucleosidase, putative OS=Ricinus communis GN=RCOM_1326370 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18631: 49258-51356
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001887_010 0.0 - - mta/sah nucleosidase, putative [Ricinus communis]
2 Hb_003685_070 0.0558048583 - - RecName: Full=(S)-hydroxynitrile lyase; AltName: Full=(S)-acetone-cyanohydrin lyase; AltName: Full=Oxynitrilase [Hevea brasiliensis]
3 Hb_150179_010 0.0694212621 - - hypothetical protein JCGZ_21079 [Jatropha curcas]
4 Hb_001557_030 0.0723951743 - - hypothetical protein CICLE_v10005306mg [Citrus clementina]
5 Hb_003765_010 0.078177032 - - berberine bridge enzyme [Hevea brasiliensis]
6 Hb_005357_170 0.0784171698 - - Pectinesterase precursor, putative [Ricinus communis]
7 Hb_002073_210 0.0787143778 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000331_380 0.0847339551 - - hypothetical protein POPTR_0012s09560g [Populus trichocarpa]
9 Hb_011224_030 0.0901215553 - - PREDICTED: oligopeptide transporter 1-like isoform X1 [Jatropha curcas]
10 Hb_007007_140 0.0902579326 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL6 [Jatropha curcas]
11 Hb_003754_010 0.093667577 - - hypothetical protein POPTR_0019s09950g [Populus trichocarpa]
12 Hb_001433_230 0.0956913765 - - PREDICTED: kinesin-4-like [Jatropha curcas]
13 Hb_000307_160 0.0960335243 - - PREDICTED: uncharacterized protein At1g76070 [Jatropha curcas]
14 Hb_014834_100 0.09660531 - - PREDICTED: probable aquaporin TIP-type [Gossypium raimondii]
15 Hb_000352_210 0.097264485 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase 1 [Jatropha curcas]
16 Hb_024066_020 0.0972683471 - - P66 protein [Hevea brasiliensis]
17 Hb_004396_020 0.0983867718 - - SAUR-like auxin-responsive protein family [Theobroma cacao]
18 Hb_004957_010 0.1008361968 - - PREDICTED: probable aquaporin NIP-type [Prunus mume]
19 Hb_004732_080 0.1009483113 - - PREDICTED: germin-like protein subfamily 3 member 2 [Populus euphratica]
20 Hb_006249_010 0.1009494571 - - hypothetical protein JCGZ_13152 [Jatropha curcas]

Gene co-expression network

sample Hb_001887_010 Hb_001887_010 Hb_003685_070 Hb_003685_070 Hb_001887_010--Hb_003685_070 Hb_150179_010 Hb_150179_010 Hb_001887_010--Hb_150179_010 Hb_001557_030 Hb_001557_030 Hb_001887_010--Hb_001557_030 Hb_003765_010 Hb_003765_010 Hb_001887_010--Hb_003765_010 Hb_005357_170 Hb_005357_170 Hb_001887_010--Hb_005357_170 Hb_002073_210 Hb_002073_210 Hb_001887_010--Hb_002073_210 Hb_003685_070--Hb_150179_010 Hb_011224_030 Hb_011224_030 Hb_003685_070--Hb_011224_030 Hb_007007_140 Hb_007007_140 Hb_003685_070--Hb_007007_140 Hb_003685_070--Hb_005357_170 Hb_024066_020 Hb_024066_020 Hb_003685_070--Hb_024066_020 Hb_150179_010--Hb_011224_030 Hb_150179_010--Hb_001557_030 Hb_029584_030 Hb_029584_030 Hb_150179_010--Hb_029584_030 Hb_000664_010 Hb_000664_010 Hb_150179_010--Hb_000664_010 Hb_150179_010--Hb_007007_140 Hb_014834_100 Hb_014834_100 Hb_001557_030--Hb_014834_100 Hb_001557_030--Hb_011224_030 Hb_001557_030--Hb_007007_140 Hb_001557_030--Hb_029584_030 Hb_003765_010--Hb_005357_170 Hb_153544_020 Hb_153544_020 Hb_003765_010--Hb_153544_020 Hb_000868_020 Hb_000868_020 Hb_003765_010--Hb_000868_020 Hb_003754_010 Hb_003754_010 Hb_003765_010--Hb_003754_010 Hb_010327_060 Hb_010327_060 Hb_003765_010--Hb_010327_060 Hb_055276_010 Hb_055276_010 Hb_005357_170--Hb_055276_010 Hb_001433_230 Hb_001433_230 Hb_005357_170--Hb_001433_230 Hb_005357_170--Hb_011224_030 Hb_151436_010 Hb_151436_010 Hb_002073_210--Hb_151436_010 Hb_000331_380 Hb_000331_380 Hb_002073_210--Hb_000331_380 Hb_006970_180 Hb_006970_180 Hb_002073_210--Hb_006970_180 Hb_000431_050 Hb_000431_050 Hb_002073_210--Hb_000431_050 Hb_022250_140 Hb_022250_140 Hb_002073_210--Hb_022250_140 Hb_000352_210 Hb_000352_210 Hb_002073_210--Hb_000352_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.662444 0 7.74867 94.6335 0 0.0615773
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 9.61783

CAGE analysis