Hb_003765_010

Information

Type -
Description -
Location Contig3765: 2504-13821
Sequence    

Annotation

kegg
ID pop:POPTR_0001s46690g
description POPTRDRAFT_642620; hypothetical protein
nr
ID AEK87147.1
description berberine bridge enzyme [Hevea brasiliensis]
swissprot
ID Q9SVG4
description Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2
trembl
ID I6MGW2
description Berberine bridge enzyme OS=Hevea brasiliensis GN=BBE1 PE=2 SV=1
Gene Ontology
ID GO:0008762
description reticuline oxidase-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003765_010 0.0 - - berberine bridge enzyme [Hevea brasiliensis]
2 Hb_005357_170 0.0768338891 - - Pectinesterase precursor, putative [Ricinus communis]
3 Hb_001887_010 0.078177032 - - mta/sah nucleosidase, putative [Ricinus communis]
4 Hb_153544_020 0.0863765312 transcription factor TF Family: TCP PREDICTED: transcription factor TCP12 [Jatropha curcas]
5 Hb_000868_020 0.0912062594 - - -
6 Hb_003754_010 0.091933857 - - hypothetical protein POPTR_0019s09950g [Populus trichocarpa]
7 Hb_010327_060 0.0941767253 - - hypothetical protein B456_001G246300 [Gossypium raimondii]
8 Hb_000107_240 0.094920477 - - organic anion transporter, putative [Ricinus communis]
9 Hb_006249_010 0.0972840737 - - hypothetical protein JCGZ_13152 [Jatropha curcas]
10 Hb_010833_010 0.0988548633 - - hypothetical protein JCGZ_05701 [Jatropha curcas]
11 Hb_000997_220 0.1015404322 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA14-like [Jatropha curcas]
12 Hb_004957_010 0.10257483 - - PREDICTED: probable aquaporin NIP-type [Prunus mume]
13 Hb_000307_160 0.105683272 - - PREDICTED: uncharacterized protein At1g76070 [Jatropha curcas]
14 Hb_011169_010 0.1058613921 - - mta/sah nucleosidase, putative [Ricinus communis]
15 Hb_055276_010 0.106714425 - - hypothetical protein POPTR_0003s02950g [Populus trichocarpa]
16 Hb_103468_010 0.1077245963 - - protein binding protein, putative [Ricinus communis]
17 Hb_001634_050 0.107743359 - - PREDICTED: fasciclin-like arabinogalactan protein 12 [Jatropha curcas]
18 Hb_002757_030 0.1084451037 - - unnamed protein product [Vitis vinifera]
19 Hb_001433_230 0.1094985863 - - PREDICTED: kinesin-4-like [Jatropha curcas]
20 Hb_006651_020 0.1095719852 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]

Gene co-expression network

sample Hb_003765_010 Hb_003765_010 Hb_005357_170 Hb_005357_170 Hb_003765_010--Hb_005357_170 Hb_001887_010 Hb_001887_010 Hb_003765_010--Hb_001887_010 Hb_153544_020 Hb_153544_020 Hb_003765_010--Hb_153544_020 Hb_000868_020 Hb_000868_020 Hb_003765_010--Hb_000868_020 Hb_003754_010 Hb_003754_010 Hb_003765_010--Hb_003754_010 Hb_010327_060 Hb_010327_060 Hb_003765_010--Hb_010327_060 Hb_003685_070 Hb_003685_070 Hb_005357_170--Hb_003685_070 Hb_005357_170--Hb_001887_010 Hb_055276_010 Hb_055276_010 Hb_005357_170--Hb_055276_010 Hb_001433_230 Hb_001433_230 Hb_005357_170--Hb_001433_230 Hb_011224_030 Hb_011224_030 Hb_005357_170--Hb_011224_030 Hb_001887_010--Hb_003685_070 Hb_150179_010 Hb_150179_010 Hb_001887_010--Hb_150179_010 Hb_001557_030 Hb_001557_030 Hb_001887_010--Hb_001557_030 Hb_002073_210 Hb_002073_210 Hb_001887_010--Hb_002073_210 Hb_153544_020--Hb_003754_010 Hb_004957_010 Hb_004957_010 Hb_153544_020--Hb_004957_010 Hb_010833_010 Hb_010833_010 Hb_153544_020--Hb_010833_010 Hb_006651_020 Hb_006651_020 Hb_153544_020--Hb_006651_020 Hb_153544_020--Hb_010327_060 Hb_000997_220 Hb_000997_220 Hb_153544_020--Hb_000997_220 Hb_000868_020--Hb_010327_060 Hb_000028_090 Hb_000028_090 Hb_000868_020--Hb_000028_090 Hb_000107_240 Hb_000107_240 Hb_000868_020--Hb_000107_240 Hb_002757_040 Hb_002757_040 Hb_000868_020--Hb_002757_040 Hb_000307_160 Hb_000307_160 Hb_000868_020--Hb_000307_160 Hb_006249_010 Hb_006249_010 Hb_000868_020--Hb_006249_010 Hb_003754_010--Hb_004957_010 Hb_001308_010 Hb_001308_010 Hb_003754_010--Hb_001308_010 Hb_003754_010--Hb_000997_220 Hb_003754_010--Hb_010833_010 Hb_003754_010--Hb_006651_020 Hb_010327_060--Hb_002757_040 Hb_002757_030 Hb_002757_030 Hb_010327_060--Hb_002757_030 Hb_010327_060--Hb_000028_090 Hb_004030_040 Hb_004030_040 Hb_010327_060--Hb_004030_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.122944 0 0.61759 12.7997 0.010123 0.0353889
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0229762 0 0 0.00719342 1.75662

CAGE analysis