Hb_010327_060

Information

Type -
Description -
Location Contig10327: 40814-41101
Sequence    

Annotation

kegg
ID cic:CICLE_v10029920mg
description hypothetical protein
nr
ID KJB06525.1
description hypothetical protein B456_001G246300 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2QH15
description Gossypium raimondii chromosome 1, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_001G246300 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010327_060 0.0 - - hypothetical protein B456_001G246300 [Gossypium raimondii]
2 Hb_002757_040 0.029437621 - - -
3 Hb_000868_020 0.0486865984 - - -
4 Hb_002757_030 0.0491204711 - - unnamed protein product [Vitis vinifera]
5 Hb_153544_020 0.0507420923 transcription factor TF Family: TCP PREDICTED: transcription factor TCP12 [Jatropha curcas]
6 Hb_000028_090 0.0552994529 - - PREDICTED: uncharacterized protein LOC105135810 [Populus euphratica]
7 Hb_004030_040 0.0583713308 - - PREDICTED: protein NRT1/ PTR FAMILY 2.8 [Jatropha curcas]
8 Hb_006651_020 0.0653756622 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
9 Hb_010833_010 0.0667949899 - - hypothetical protein JCGZ_05701 [Jatropha curcas]
10 Hb_009164_010 0.0695696138 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Jatropha curcas]
11 Hb_009620_080 0.0697558308 - - hypothetical protein POPTR_0007s08150g [Populus trichocarpa]
12 Hb_006249_010 0.0717542844 - - hypothetical protein JCGZ_13152 [Jatropha curcas]
13 Hb_027472_250 0.0771411267 - - hypothetical protein POPTR_0007s08150g [Populus trichocarpa]
14 Hb_000521_030 0.0829410945 - - PREDICTED: uncharacterized protein LOC105650350 [Jatropha curcas]
15 Hb_003754_010 0.0850711756 - - hypothetical protein POPTR_0019s09950g [Populus trichocarpa]
16 Hb_000485_050 0.0861008795 - - PREDICTED: alpha-dioxygenase 1 [Jatropha curcas]
17 Hb_000107_240 0.0876614098 - - organic anion transporter, putative [Ricinus communis]
18 Hb_000307_160 0.0879480579 - - PREDICTED: uncharacterized protein At1g76070 [Jatropha curcas]
19 Hb_004957_010 0.0933866188 - - PREDICTED: probable aquaporin NIP-type [Prunus mume]
20 Hb_003765_010 0.0941767253 - - berberine bridge enzyme [Hevea brasiliensis]

Gene co-expression network

sample Hb_010327_060 Hb_010327_060 Hb_002757_040 Hb_002757_040 Hb_010327_060--Hb_002757_040 Hb_000868_020 Hb_000868_020 Hb_010327_060--Hb_000868_020 Hb_002757_030 Hb_002757_030 Hb_010327_060--Hb_002757_030 Hb_153544_020 Hb_153544_020 Hb_010327_060--Hb_153544_020 Hb_000028_090 Hb_000028_090 Hb_010327_060--Hb_000028_090 Hb_004030_040 Hb_004030_040 Hb_010327_060--Hb_004030_040 Hb_002757_040--Hb_000028_090 Hb_002757_040--Hb_002757_030 Hb_009164_010 Hb_009164_010 Hb_002757_040--Hb_009164_010 Hb_009620_080 Hb_009620_080 Hb_002757_040--Hb_009620_080 Hb_002757_040--Hb_000868_020 Hb_000868_020--Hb_000028_090 Hb_000107_240 Hb_000107_240 Hb_000868_020--Hb_000107_240 Hb_000307_160 Hb_000307_160 Hb_000868_020--Hb_000307_160 Hb_006249_010 Hb_006249_010 Hb_000868_020--Hb_006249_010 Hb_002757_030--Hb_004030_040 Hb_002757_030--Hb_009164_010 Hb_006651_020 Hb_006651_020 Hb_002757_030--Hb_006651_020 Hb_002757_030--Hb_153544_020 Hb_003754_010 Hb_003754_010 Hb_153544_020--Hb_003754_010 Hb_004957_010 Hb_004957_010 Hb_153544_020--Hb_004957_010 Hb_010833_010 Hb_010833_010 Hb_153544_020--Hb_010833_010 Hb_153544_020--Hb_006651_020 Hb_000997_220 Hb_000997_220 Hb_153544_020--Hb_000997_220 Hb_000028_090--Hb_009620_080 Hb_027472_250 Hb_027472_250 Hb_000028_090--Hb_027472_250 Hb_000485_050 Hb_000485_050 Hb_000028_090--Hb_000485_050 Hb_004030_040--Hb_006651_020 Hb_004030_040--Hb_009164_010 Hb_004030_040--Hb_153544_020 Hb_001856_250 Hb_001856_250 Hb_004030_040--Hb_001856_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.165719 6.32448 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.988098

CAGE analysis