Hb_000028_090

Information

Type -
Description -
Location Contig28: 89787-90287
Sequence    

Annotation

kegg
ID pop:POPTR_0520s00220g
description hypothetical protein
nr
ID XP_011039166.1
description PREDICTED: uncharacterized protein LOC105135810 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9I2D4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s04290g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000028_090 0.0 - - PREDICTED: uncharacterized protein LOC105135810 [Populus euphratica]
2 Hb_009620_080 0.0154590391 - - hypothetical protein POPTR_0007s08150g [Populus trichocarpa]
3 Hb_027472_250 0.0225379303 - - hypothetical protein POPTR_0007s08150g [Populus trichocarpa]
4 Hb_000485_050 0.0427522124 - - PREDICTED: alpha-dioxygenase 1 [Jatropha curcas]
5 Hb_002757_040 0.0461611349 - - -
6 Hb_010327_060 0.0552994529 - - hypothetical protein B456_001G246300 [Gossypium raimondii]
7 Hb_000868_020 0.0593977807 - - -
8 Hb_003925_010 0.0748223873 - - Polygalacturonase precursor, putative [Ricinus communis]
9 Hb_000307_160 0.0748394469 - - PREDICTED: uncharacterized protein At1g76070 [Jatropha curcas]
10 Hb_000107_240 0.0815845399 - - organic anion transporter, putative [Ricinus communis]
11 Hb_005841_070 0.083794927 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000429_070 0.0845330204 - - hypothetical protein POPTR_0006s05480g [Populus trichocarpa]
13 Hb_000521_030 0.0856254586 - - PREDICTED: uncharacterized protein LOC105650350 [Jatropha curcas]
14 Hb_001401_130 0.0871386917 - - Calcium-binding EF-hand family protein, putative [Theobroma cacao]
15 Hb_006249_010 0.0878374912 - - hypothetical protein JCGZ_13152 [Jatropha curcas]
16 Hb_002757_030 0.0909428137 - - unnamed protein product [Vitis vinifera]
17 Hb_012180_070 0.0923657397 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001386_070 0.097054394 - - PREDICTED: glucuronoxylan 4-O-methyltransferase 1-like [Jatropha curcas]
19 Hb_004162_150 0.0999171231 - - hypothetical protein POPTR_0009s00870g [Populus trichocarpa]
20 Hb_153544_020 0.1003169532 transcription factor TF Family: TCP PREDICTED: transcription factor TCP12 [Jatropha curcas]

Gene co-expression network

sample Hb_000028_090 Hb_000028_090 Hb_009620_080 Hb_009620_080 Hb_000028_090--Hb_009620_080 Hb_027472_250 Hb_027472_250 Hb_000028_090--Hb_027472_250 Hb_000485_050 Hb_000485_050 Hb_000028_090--Hb_000485_050 Hb_002757_040 Hb_002757_040 Hb_000028_090--Hb_002757_040 Hb_010327_060 Hb_010327_060 Hb_000028_090--Hb_010327_060 Hb_000868_020 Hb_000868_020 Hb_000028_090--Hb_000868_020 Hb_009620_080--Hb_027472_250 Hb_009620_080--Hb_000485_050 Hb_009620_080--Hb_002757_040 Hb_009620_080--Hb_010327_060 Hb_003925_010 Hb_003925_010 Hb_009620_080--Hb_003925_010 Hb_027472_250--Hb_000485_050 Hb_027472_250--Hb_003925_010 Hb_027472_250--Hb_002757_040 Hb_000429_070 Hb_000429_070 Hb_027472_250--Hb_000429_070 Hb_000485_050--Hb_003925_010 Hb_000307_160 Hb_000307_160 Hb_000485_050--Hb_000307_160 Hb_004162_150 Hb_004162_150 Hb_000485_050--Hb_004162_150 Hb_002757_040--Hb_010327_060 Hb_002757_030 Hb_002757_030 Hb_002757_040--Hb_002757_030 Hb_009164_010 Hb_009164_010 Hb_002757_040--Hb_009164_010 Hb_002757_040--Hb_000868_020 Hb_010327_060--Hb_000868_020 Hb_010327_060--Hb_002757_030 Hb_153544_020 Hb_153544_020 Hb_010327_060--Hb_153544_020 Hb_004030_040 Hb_004030_040 Hb_010327_060--Hb_004030_040 Hb_000107_240 Hb_000107_240 Hb_000868_020--Hb_000107_240 Hb_000868_020--Hb_000307_160 Hb_006249_010 Hb_006249_010 Hb_000868_020--Hb_006249_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0439683 3.42801 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.393117

CAGE analysis