Hb_000868_020

Information

Type -
Description -
Location Contig868: 42073-42580
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000868_020 0.0 - - -
2 Hb_010327_060 0.0486865984 - - hypothetical protein B456_001G246300 [Gossypium raimondii]
3 Hb_000028_090 0.0593977807 - - PREDICTED: uncharacterized protein LOC105135810 [Populus euphratica]
4 Hb_000107_240 0.063154691 - - organic anion transporter, putative [Ricinus communis]
5 Hb_002757_040 0.0632467124 - - -
6 Hb_000307_160 0.0671652631 - - PREDICTED: uncharacterized protein At1g76070 [Jatropha curcas]
7 Hb_006249_010 0.0684694136 - - hypothetical protein JCGZ_13152 [Jatropha curcas]
8 Hb_153544_020 0.0693645871 transcription factor TF Family: TCP PREDICTED: transcription factor TCP12 [Jatropha curcas]
9 Hb_103468_010 0.0708055072 - - protein binding protein, putative [Ricinus communis]
10 Hb_009620_080 0.0714910244 - - hypothetical protein POPTR_0007s08150g [Populus trichocarpa]
11 Hb_000485_050 0.0720550163 - - PREDICTED: alpha-dioxygenase 1 [Jatropha curcas]
12 Hb_027472_250 0.0732276312 - - hypothetical protein POPTR_0007s08150g [Populus trichocarpa]
13 Hb_010833_010 0.0839968755 - - hypothetical protein JCGZ_05701 [Jatropha curcas]
14 Hb_002757_030 0.0852856404 - - unnamed protein product [Vitis vinifera]
15 Hb_000521_030 0.0907148708 - - PREDICTED: uncharacterized protein LOC105650350 [Jatropha curcas]
16 Hb_001634_050 0.0910573078 - - PREDICTED: fasciclin-like arabinogalactan protein 12 [Jatropha curcas]
17 Hb_003765_010 0.0912062594 - - berberine bridge enzyme [Hevea brasiliensis]
18 Hb_012180_070 0.0945273651 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003528_090 0.0948302783 - - Uncharacterized protein TCM_037169 [Theobroma cacao]
20 Hb_001401_130 0.0951073671 - - Calcium-binding EF-hand family protein, putative [Theobroma cacao]

Gene co-expression network

sample Hb_000868_020 Hb_000868_020 Hb_010327_060 Hb_010327_060 Hb_000868_020--Hb_010327_060 Hb_000028_090 Hb_000028_090 Hb_000868_020--Hb_000028_090 Hb_000107_240 Hb_000107_240 Hb_000868_020--Hb_000107_240 Hb_002757_040 Hb_002757_040 Hb_000868_020--Hb_002757_040 Hb_000307_160 Hb_000307_160 Hb_000868_020--Hb_000307_160 Hb_006249_010 Hb_006249_010 Hb_000868_020--Hb_006249_010 Hb_010327_060--Hb_002757_040 Hb_002757_030 Hb_002757_030 Hb_010327_060--Hb_002757_030 Hb_153544_020 Hb_153544_020 Hb_010327_060--Hb_153544_020 Hb_010327_060--Hb_000028_090 Hb_004030_040 Hb_004030_040 Hb_010327_060--Hb_004030_040 Hb_009620_080 Hb_009620_080 Hb_000028_090--Hb_009620_080 Hb_027472_250 Hb_027472_250 Hb_000028_090--Hb_027472_250 Hb_000485_050 Hb_000485_050 Hb_000028_090--Hb_000485_050 Hb_000028_090--Hb_002757_040 Hb_001634_050 Hb_001634_050 Hb_000107_240--Hb_001634_050 Hb_000107_240--Hb_006249_010 Hb_000107_240--Hb_000307_160 Hb_012180_070 Hb_012180_070 Hb_000107_240--Hb_012180_070 Hb_001401_130 Hb_001401_130 Hb_000107_240--Hb_001401_130 Hb_002757_040--Hb_002757_030 Hb_009164_010 Hb_009164_010 Hb_002757_040--Hb_009164_010 Hb_002757_040--Hb_009620_080 Hb_004162_150 Hb_004162_150 Hb_000307_160--Hb_004162_150 Hb_000307_160--Hb_000485_050 Hb_003925_010 Hb_003925_010 Hb_000307_160--Hb_003925_010 Hb_000307_160--Hb_006249_010 Hb_006249_010--Hb_001634_050 Hb_000318_500 Hb_000318_500 Hb_006249_010--Hb_000318_500 Hb_006570_170 Hb_006570_170 Hb_006249_010--Hb_006570_170 Hb_103468_010 Hb_103468_010 Hb_006249_010--Hb_103468_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.27892 43.3615 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.135631 5.42726

CAGE analysis