Hb_103468_010

Information

Type -
Description -
Location Contig103468: 111-532
Sequence    

Annotation

kegg
ID rcu:RCOM_1711740
description protein binding protein, putative
nr
ID XP_002524159.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SDU0
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_1711740 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_103468_010 0.0 - - protein binding protein, putative [Ricinus communis]
2 Hb_003060_020 0.0565223647 - - serine carboxypeptidase, putative [Ricinus communis]
3 Hb_014834_100 0.065579592 - - PREDICTED: probable aquaporin TIP-type [Gossypium raimondii]
4 Hb_006249_010 0.0675403708 - - hypothetical protein JCGZ_13152 [Jatropha curcas]
5 Hb_027577_010 0.0701448875 - - PREDICTED: uncharacterized protein LOC104779928 [Camelina sativa]
6 Hb_000868_020 0.0708055072 - - -
7 Hb_180518_010 0.0708380902 - - PREDICTED: receptor-like protein 2 [Jatropha curcas]
8 Hb_003528_090 0.0726668798 - - Uncharacterized protein TCM_037169 [Theobroma cacao]
9 Hb_000107_240 0.0778893672 - - organic anion transporter, putative [Ricinus communis]
10 Hb_000318_500 0.081344777 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001634_050 0.0814601221 - - PREDICTED: fasciclin-like arabinogalactan protein 12 [Jatropha curcas]
12 Hb_000327_350 0.0822517302 - - PREDICTED: 3-ketoacyl-CoA synthase 21-like [Jatropha curcas]
13 Hb_001433_230 0.0833407105 - - PREDICTED: kinesin-4-like [Jatropha curcas]
14 Hb_141096_010 0.0841561476 - - PREDICTED: zinc finger CCCH domain-containing protein 55-like [Jatropha curcas]
15 Hb_000816_090 0.0847032837 transcription factor TF Family: TRAF protein binding protein, putative [Ricinus communis]
16 Hb_011081_010 0.0864560916 - - unnamed protein product [Coffea canephora]
17 Hb_153544_020 0.0881012171 transcription factor TF Family: TCP PREDICTED: transcription factor TCP12 [Jatropha curcas]
18 Hb_005396_020 0.0881433573 - - hypothetical protein CICLE_v10033278mg [Citrus clementina]
19 Hb_000997_220 0.0899541732 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA14-like [Jatropha curcas]
20 Hb_001557_030 0.090385258 - - hypothetical protein CICLE_v10005306mg [Citrus clementina]

Gene co-expression network

sample Hb_103468_010 Hb_103468_010 Hb_003060_020 Hb_003060_020 Hb_103468_010--Hb_003060_020 Hb_014834_100 Hb_014834_100 Hb_103468_010--Hb_014834_100 Hb_006249_010 Hb_006249_010 Hb_103468_010--Hb_006249_010 Hb_027577_010 Hb_027577_010 Hb_103468_010--Hb_027577_010 Hb_000868_020 Hb_000868_020 Hb_103468_010--Hb_000868_020 Hb_180518_010 Hb_180518_010 Hb_103468_010--Hb_180518_010 Hb_003528_090 Hb_003528_090 Hb_003060_020--Hb_003528_090 Hb_000816_090 Hb_000816_090 Hb_003060_020--Hb_000816_090 Hb_000327_350 Hb_000327_350 Hb_003060_020--Hb_000327_350 Hb_005396_020 Hb_005396_020 Hb_003060_020--Hb_005396_020 Hb_001634_050 Hb_001634_050 Hb_003060_020--Hb_001634_050 Hb_001557_030 Hb_001557_030 Hb_014834_100--Hb_001557_030 Hb_011224_030 Hb_011224_030 Hb_014834_100--Hb_011224_030 Hb_001433_230 Hb_001433_230 Hb_014834_100--Hb_001433_230 Hb_150179_010 Hb_150179_010 Hb_014834_100--Hb_150179_010 Hb_002073_210 Hb_002073_210 Hb_014834_100--Hb_002073_210 Hb_006249_010--Hb_001634_050 Hb_000318_500 Hb_000318_500 Hb_006249_010--Hb_000318_500 Hb_000107_240 Hb_000107_240 Hb_006249_010--Hb_000107_240 Hb_006570_170 Hb_006570_170 Hb_006249_010--Hb_006570_170 Hb_006249_010--Hb_000868_020 Hb_027577_010--Hb_180518_010 Hb_000487_350 Hb_000487_350 Hb_027577_010--Hb_000487_350 Hb_000581_010 Hb_000581_010 Hb_027577_010--Hb_000581_010 Hb_001856_250 Hb_001856_250 Hb_027577_010--Hb_001856_250 Hb_000729_040 Hb_000729_040 Hb_027577_010--Hb_000729_040 Hb_000483_340 Hb_000483_340 Hb_027577_010--Hb_000483_340 Hb_010327_060 Hb_010327_060 Hb_000868_020--Hb_010327_060 Hb_000028_090 Hb_000028_090 Hb_000868_020--Hb_000028_090 Hb_000868_020--Hb_000107_240 Hb_002757_040 Hb_002757_040 Hb_000868_020--Hb_002757_040 Hb_000307_160 Hb_000307_160 Hb_000868_020--Hb_000307_160 Hb_180518_010--Hb_000581_010 Hb_180518_010--Hb_000487_350 Hb_002031_020 Hb_002031_020 Hb_180518_010--Hb_002031_020 Hb_005291_020 Hb_005291_020 Hb_180518_010--Hb_005291_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.555437 5.2734 104.381 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.04973 13.7684

CAGE analysis