Hb_001401_130

Information

Type -
Description -
Location Contig1401: 140623-140898
Sequence    

Annotation

kegg
ID tcc:TCM_033864
description Calcium-binding EF-hand family protein, putative
nr
ID XP_007017269.1
description Calcium-binding EF-hand family protein, putative [Theobroma cacao]
swissprot
ID O22845
description Calmodulin-like protein 5 OS=Arabidopsis thaliana GN=CML5 PE=2 SV=2
trembl
ID A0A061FJ21
description Calcium-binding EF-hand family protein, putative OS=Theobroma cacao GN=TCM_033864 PE=4 SV=1
Gene Ontology
ID GO:0005509
description calcium-binding ef-hand family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001401_130 0.0 - - Calcium-binding EF-hand family protein, putative [Theobroma cacao]
2 Hb_000429_070 0.0298017944 - - hypothetical protein POPTR_0006s05480g [Populus trichocarpa]
3 Hb_001386_070 0.0560094821 - - PREDICTED: glucuronoxylan 4-O-methyltransferase 1-like [Jatropha curcas]
4 Hb_012180_070 0.058080684 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003528_090 0.0646715192 - - Uncharacterized protein TCM_037169 [Theobroma cacao]
6 Hb_002186_190 0.0682376647 - - -
7 Hb_000012_340 0.0690484566 - - PREDICTED: inorganic pyrophosphatase 3-like [Jatropha curcas]
8 Hb_000107_240 0.0710598895 - - organic anion transporter, putative [Ricinus communis]
9 Hb_000485_050 0.0713837256 - - PREDICTED: alpha-dioxygenase 1 [Jatropha curcas]
10 Hb_001634_050 0.0739873151 - - PREDICTED: fasciclin-like arabinogalactan protein 12 [Jatropha curcas]
11 Hb_003925_010 0.0788939014 - - Polygalacturonase precursor, putative [Ricinus communis]
12 Hb_027472_250 0.0789772393 - - hypothetical protein POPTR_0007s08150g [Populus trichocarpa]
13 Hb_005396_020 0.0793730835 - - hypothetical protein CICLE_v10033278mg [Citrus clementina]
14 Hb_000816_090 0.0850040857 transcription factor TF Family: TRAF protein binding protein, putative [Ricinus communis]
15 Hb_003060_020 0.0853597273 - - serine carboxypeptidase, putative [Ricinus communis]
16 Hb_009620_080 0.0854941893 - - hypothetical protein POPTR_0007s08150g [Populus trichocarpa]
17 Hb_006570_170 0.0858496165 - - Gibberellin-regulated protein 1 precursor, putative [Ricinus communis]
18 Hb_000028_090 0.0871386917 - - PREDICTED: uncharacterized protein LOC105135810 [Populus euphratica]
19 Hb_000307_160 0.0889340672 - - PREDICTED: uncharacterized protein At1g76070 [Jatropha curcas]
20 Hb_005539_330 0.0895955428 - - PREDICTED: WAT1-related protein At2g39510-like [Jatropha curcas]

Gene co-expression network

sample Hb_001401_130 Hb_001401_130 Hb_000429_070 Hb_000429_070 Hb_001401_130--Hb_000429_070 Hb_001386_070 Hb_001386_070 Hb_001401_130--Hb_001386_070 Hb_012180_070 Hb_012180_070 Hb_001401_130--Hb_012180_070 Hb_003528_090 Hb_003528_090 Hb_001401_130--Hb_003528_090 Hb_002186_190 Hb_002186_190 Hb_001401_130--Hb_002186_190 Hb_000012_340 Hb_000012_340 Hb_001401_130--Hb_000012_340 Hb_000429_070--Hb_001386_070 Hb_000429_070--Hb_012180_070 Hb_000485_050 Hb_000485_050 Hb_000429_070--Hb_000485_050 Hb_000429_070--Hb_002186_190 Hb_003925_010 Hb_003925_010 Hb_000429_070--Hb_003925_010 Hb_001386_070--Hb_012180_070 Hb_001386_070--Hb_002186_190 Hb_001386_070--Hb_003925_010 Hb_001386_070--Hb_000485_050 Hb_001634_050 Hb_001634_050 Hb_012180_070--Hb_001634_050 Hb_005396_020 Hb_005396_020 Hb_012180_070--Hb_005396_020 Hb_000107_240 Hb_000107_240 Hb_012180_070--Hb_000107_240 Hb_003060_020 Hb_003060_020 Hb_003528_090--Hb_003060_020 Hb_001157_120 Hb_001157_120 Hb_003528_090--Hb_001157_120 Hb_000816_090 Hb_000816_090 Hb_003528_090--Hb_000816_090 Hb_003528_090--Hb_005396_020 Hb_000327_350 Hb_000327_350 Hb_003528_090--Hb_000327_350 Hb_000637_090 Hb_000637_090 Hb_002186_190--Hb_000637_090 Hb_002186_190--Hb_000012_340 Hb_007677_010 Hb_007677_010 Hb_002186_190--Hb_007677_010 Hb_009470_010 Hb_009470_010 Hb_002186_190--Hb_009470_010 Hb_000816_170 Hb_000816_170 Hb_000012_340--Hb_000816_170 Hb_001123_080 Hb_001123_080 Hb_000012_340--Hb_001123_080 Hb_005539_330 Hb_005539_330 Hb_000012_340--Hb_005539_330 Hb_003607_040 Hb_003607_040 Hb_000012_340--Hb_003607_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.40262 4.15381 282.414 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.688074 21.0639

CAGE analysis