Hb_001386_070

Information

Type -
Description -
Location Contig1386: 126699-127592
Sequence    

Annotation

kegg
ID rcu:RCOM_1676970
description hypothetical protein
nr
ID XP_012072694.1
description PREDICTED: glucuronoxylan 4-O-methyltransferase 1-like [Jatropha curcas]
swissprot
ID Q6NMK1
description Glucuronoxylan 4-O-methyltransferase 1 OS=Arabidopsis thaliana GN=GXM1 PE=1 SV=1
trembl
ID A0A067LG55
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10113 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10582: 126819-127599
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001386_070 0.0 - - PREDICTED: glucuronoxylan 4-O-methyltransferase 1-like [Jatropha curcas]
2 Hb_000429_070 0.0512378913 - - hypothetical protein POPTR_0006s05480g [Populus trichocarpa]
3 Hb_001401_130 0.0560094821 - - Calcium-binding EF-hand family protein, putative [Theobroma cacao]
4 Hb_012180_070 0.0567377843 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002186_190 0.0816550322 - - -
6 Hb_003925_010 0.0840204352 - - Polygalacturonase precursor, putative [Ricinus communis]
7 Hb_000485_050 0.0858485681 - - PREDICTED: alpha-dioxygenase 1 [Jatropha curcas]
8 Hb_001634_050 0.086135736 - - PREDICTED: fasciclin-like arabinogalactan protein 12 [Jatropha curcas]
9 Hb_005396_020 0.0862022708 - - hypothetical protein CICLE_v10033278mg [Citrus clementina]
10 Hb_014881_020 0.0868528393 - - Protein P21, putative [Ricinus communis]
11 Hb_000107_240 0.0869467514 - - organic anion transporter, putative [Ricinus communis]
12 Hb_027472_250 0.0886047708 - - hypothetical protein POPTR_0007s08150g [Populus trichocarpa]
13 Hb_000012_340 0.0925976361 - - PREDICTED: inorganic pyrophosphatase 3-like [Jatropha curcas]
14 Hb_009620_080 0.0937482507 - - hypothetical protein POPTR_0007s08150g [Populus trichocarpa]
15 Hb_000028_090 0.097054394 - - PREDICTED: uncharacterized protein LOC105135810 [Populus euphratica]
16 Hb_003528_090 0.0972476644 - - Uncharacterized protein TCM_037169 [Theobroma cacao]
17 Hb_001123_080 0.098625099 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005539_330 0.1010960036 - - PREDICTED: WAT1-related protein At2g39510-like [Jatropha curcas]
19 Hb_006570_170 0.1022054267 - - Gibberellin-regulated protein 1 precursor, putative [Ricinus communis]
20 Hb_000521_030 0.1026445413 - - PREDICTED: uncharacterized protein LOC105650350 [Jatropha curcas]

Gene co-expression network

sample Hb_001386_070 Hb_001386_070 Hb_000429_070 Hb_000429_070 Hb_001386_070--Hb_000429_070 Hb_001401_130 Hb_001401_130 Hb_001386_070--Hb_001401_130 Hb_012180_070 Hb_012180_070 Hb_001386_070--Hb_012180_070 Hb_002186_190 Hb_002186_190 Hb_001386_070--Hb_002186_190 Hb_003925_010 Hb_003925_010 Hb_001386_070--Hb_003925_010 Hb_000485_050 Hb_000485_050 Hb_001386_070--Hb_000485_050 Hb_000429_070--Hb_001401_130 Hb_000429_070--Hb_012180_070 Hb_000429_070--Hb_000485_050 Hb_000429_070--Hb_002186_190 Hb_000429_070--Hb_003925_010 Hb_001401_130--Hb_012180_070 Hb_003528_090 Hb_003528_090 Hb_001401_130--Hb_003528_090 Hb_001401_130--Hb_002186_190 Hb_000012_340 Hb_000012_340 Hb_001401_130--Hb_000012_340 Hb_001634_050 Hb_001634_050 Hb_012180_070--Hb_001634_050 Hb_005396_020 Hb_005396_020 Hb_012180_070--Hb_005396_020 Hb_000107_240 Hb_000107_240 Hb_012180_070--Hb_000107_240 Hb_000637_090 Hb_000637_090 Hb_002186_190--Hb_000637_090 Hb_002186_190--Hb_000012_340 Hb_007677_010 Hb_007677_010 Hb_002186_190--Hb_007677_010 Hb_009470_010 Hb_009470_010 Hb_002186_190--Hb_009470_010 Hb_003925_010--Hb_000485_050 Hb_003925_010--Hb_000637_090 Hb_027472_250 Hb_027472_250 Hb_003925_010--Hb_027472_250 Hb_003925_010--Hb_007677_010 Hb_004162_150 Hb_004162_150 Hb_003925_010--Hb_004162_150 Hb_000485_050--Hb_027472_250 Hb_009620_080 Hb_009620_080 Hb_000485_050--Hb_009620_080 Hb_000028_090 Hb_000028_090 Hb_000485_050--Hb_000028_090 Hb_000307_160 Hb_000307_160 Hb_000485_050--Hb_000307_160 Hb_000485_050--Hb_004162_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.089195 0.413431 0.469526 43.0937 0.0954042 0.044894
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0185188 3.25889

CAGE analysis