Hb_012180_070

Information

Type -
Description -
Location Contig12180: 88488-89977
Sequence    

Annotation

kegg
ID rcu:RCOM_0703030
description hypothetical protein
nr
ID XP_002524361.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SEE2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0703030 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06627: 88370-89464
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012180_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001634_050 0.0504369805 - - PREDICTED: fasciclin-like arabinogalactan protein 12 [Jatropha curcas]
3 Hb_005396_020 0.0554593732 - - hypothetical protein CICLE_v10033278mg [Citrus clementina]
4 Hb_001386_070 0.0567377843 - - PREDICTED: glucuronoxylan 4-O-methyltransferase 1-like [Jatropha curcas]
5 Hb_001401_130 0.058080684 - - Calcium-binding EF-hand family protein, putative [Theobroma cacao]
6 Hb_000429_070 0.0603377494 - - hypothetical protein POPTR_0006s05480g [Populus trichocarpa]
7 Hb_000107_240 0.0634179822 - - organic anion transporter, putative [Ricinus communis]
8 Hb_006570_170 0.0668178156 - - Gibberellin-regulated protein 1 precursor, putative [Ricinus communis]
9 Hb_006249_010 0.0708209068 - - hypothetical protein JCGZ_13152 [Jatropha curcas]
10 Hb_000816_090 0.0757717555 transcription factor TF Family: TRAF protein binding protein, putative [Ricinus communis]
11 Hb_003528_090 0.0807657818 - - Uncharacterized protein TCM_037169 [Theobroma cacao]
12 Hb_003060_020 0.0834106269 - - serine carboxypeptidase, putative [Ricinus communis]
13 Hb_000485_050 0.0834361597 - - PREDICTED: alpha-dioxygenase 1 [Jatropha curcas]
14 Hb_000307_160 0.0851230232 - - PREDICTED: uncharacterized protein At1g76070 [Jatropha curcas]
15 Hb_000521_030 0.08996631 - - PREDICTED: uncharacterized protein LOC105650350 [Jatropha curcas]
16 Hb_014881_020 0.0906247351 - - Protein P21, putative [Ricinus communis]
17 Hb_003925_010 0.090627549 - - Polygalacturonase precursor, putative [Ricinus communis]
18 Hb_000012_340 0.0918357021 - - PREDICTED: inorganic pyrophosphatase 3-like [Jatropha curcas]
19 Hb_027472_250 0.0918900125 - - hypothetical protein POPTR_0007s08150g [Populus trichocarpa]
20 Hb_000028_090 0.0923657397 - - PREDICTED: uncharacterized protein LOC105135810 [Populus euphratica]

Gene co-expression network

sample Hb_012180_070 Hb_012180_070 Hb_001634_050 Hb_001634_050 Hb_012180_070--Hb_001634_050 Hb_005396_020 Hb_005396_020 Hb_012180_070--Hb_005396_020 Hb_001386_070 Hb_001386_070 Hb_012180_070--Hb_001386_070 Hb_001401_130 Hb_001401_130 Hb_012180_070--Hb_001401_130 Hb_000429_070 Hb_000429_070 Hb_012180_070--Hb_000429_070 Hb_000107_240 Hb_000107_240 Hb_012180_070--Hb_000107_240 Hb_006570_170 Hb_006570_170 Hb_001634_050--Hb_006570_170 Hb_001634_050--Hb_005396_020 Hb_001634_050--Hb_000107_240 Hb_006249_010 Hb_006249_010 Hb_001634_050--Hb_006249_010 Hb_022250_140 Hb_022250_140 Hb_001634_050--Hb_022250_140 Hb_000816_090 Hb_000816_090 Hb_005396_020--Hb_000816_090 Hb_003060_020 Hb_003060_020 Hb_005396_020--Hb_003060_020 Hb_005396_020--Hb_006570_170 Hb_003528_090 Hb_003528_090 Hb_005396_020--Hb_003528_090 Hb_001386_070--Hb_000429_070 Hb_001386_070--Hb_001401_130 Hb_002186_190 Hb_002186_190 Hb_001386_070--Hb_002186_190 Hb_003925_010 Hb_003925_010 Hb_001386_070--Hb_003925_010 Hb_000485_050 Hb_000485_050 Hb_001386_070--Hb_000485_050 Hb_001401_130--Hb_000429_070 Hb_001401_130--Hb_003528_090 Hb_001401_130--Hb_002186_190 Hb_000012_340 Hb_000012_340 Hb_001401_130--Hb_000012_340 Hb_000429_070--Hb_000485_050 Hb_000429_070--Hb_002186_190 Hb_000429_070--Hb_003925_010 Hb_000107_240--Hb_006249_010 Hb_000307_160 Hb_000307_160 Hb_000107_240--Hb_000307_160 Hb_000868_020 Hb_000868_020 Hb_000107_240--Hb_000868_020 Hb_000107_240--Hb_001401_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.981801 2.33353 96.9835 0.163016 0.128823
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.079162 0 0.0324608 8.58133

CAGE analysis