Hb_009620_080

Information

Type -
Description -
Location Contig9620: 50103-50452
Sequence    

Annotation

kegg
ID pop:POPTR_0007s08150g
description hypothetical protein
nr
ID XP_006380527.1
description hypothetical protein POPTR_0007s08150g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5G7Q7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s08150g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009620_080 0.0 - - hypothetical protein POPTR_0007s08150g [Populus trichocarpa]
2 Hb_027472_250 0.0132683801 - - hypothetical protein POPTR_0007s08150g [Populus trichocarpa]
3 Hb_000028_090 0.0154590391 - - PREDICTED: uncharacterized protein LOC105135810 [Populus euphratica]
4 Hb_000485_050 0.0422288683 - - PREDICTED: alpha-dioxygenase 1 [Jatropha curcas]
5 Hb_002757_040 0.0568645873 - - -
6 Hb_010327_060 0.0697558308 - - hypothetical protein B456_001G246300 [Gossypium raimondii]
7 Hb_003925_010 0.0699554304 - - Polygalacturonase precursor, putative [Ricinus communis]
8 Hb_000868_020 0.0714910244 - - -
9 Hb_005841_070 0.0776983273 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000429_070 0.0813940496 - - hypothetical protein POPTR_0006s05480g [Populus trichocarpa]
11 Hb_000307_160 0.082356362 - - PREDICTED: uncharacterized protein At1g76070 [Jatropha curcas]
12 Hb_001401_130 0.0854941893 - - Calcium-binding EF-hand family protein, putative [Theobroma cacao]
13 Hb_000107_240 0.0891191438 - - organic anion transporter, putative [Ricinus communis]
14 Hb_000521_030 0.090588671 - - PREDICTED: uncharacterized protein LOC105650350 [Jatropha curcas]
15 Hb_001386_070 0.0937482507 - - PREDICTED: glucuronoxylan 4-O-methyltransferase 1-like [Jatropha curcas]
16 Hb_012180_070 0.095963893 - - conserved hypothetical protein [Ricinus communis]
17 Hb_006249_010 0.099188181 - - hypothetical protein JCGZ_13152 [Jatropha curcas]
18 Hb_007677_010 0.099851613 - - PREDICTED: uncharacterized protein LOC105641028 [Jatropha curcas]
19 Hb_002757_030 0.1024029353 - - unnamed protein product [Vitis vinifera]
20 Hb_000637_090 0.1024720634 - - hypothetical protein JCGZ_05877 [Jatropha curcas]

Gene co-expression network

sample Hb_009620_080 Hb_009620_080 Hb_027472_250 Hb_027472_250 Hb_009620_080--Hb_027472_250 Hb_000028_090 Hb_000028_090 Hb_009620_080--Hb_000028_090 Hb_000485_050 Hb_000485_050 Hb_009620_080--Hb_000485_050 Hb_002757_040 Hb_002757_040 Hb_009620_080--Hb_002757_040 Hb_010327_060 Hb_010327_060 Hb_009620_080--Hb_010327_060 Hb_003925_010 Hb_003925_010 Hb_009620_080--Hb_003925_010 Hb_027472_250--Hb_000028_090 Hb_027472_250--Hb_000485_050 Hb_027472_250--Hb_003925_010 Hb_027472_250--Hb_002757_040 Hb_000429_070 Hb_000429_070 Hb_027472_250--Hb_000429_070 Hb_000028_090--Hb_000485_050 Hb_000028_090--Hb_002757_040 Hb_000028_090--Hb_010327_060 Hb_000868_020 Hb_000868_020 Hb_000028_090--Hb_000868_020 Hb_000485_050--Hb_003925_010 Hb_000307_160 Hb_000307_160 Hb_000485_050--Hb_000307_160 Hb_004162_150 Hb_004162_150 Hb_000485_050--Hb_004162_150 Hb_002757_040--Hb_010327_060 Hb_002757_030 Hb_002757_030 Hb_002757_040--Hb_002757_030 Hb_009164_010 Hb_009164_010 Hb_002757_040--Hb_009164_010 Hb_002757_040--Hb_000868_020 Hb_010327_060--Hb_000868_020 Hb_010327_060--Hb_002757_030 Hb_153544_020 Hb_153544_020 Hb_010327_060--Hb_153544_020 Hb_004030_040 Hb_004030_040 Hb_010327_060--Hb_004030_040 Hb_000637_090 Hb_000637_090 Hb_003925_010--Hb_000637_090 Hb_007677_010 Hb_007677_010 Hb_003925_010--Hb_007677_010 Hb_003925_010--Hb_004162_150 Hb_003925_010--Hb_000429_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.171829 18.6699 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 2.01924

CAGE analysis