Hb_009164_010

Information

Type -
Description -
Location Contig9164: 1808-2157
Sequence    

Annotation

kegg
ID rcu:RCOM_1687040
description short-chain dehydrogenase, putative (EC:1.3.1.33)
nr
ID XP_012086882.1
description PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Jatropha curcas]
swissprot
ID Q6RVV4
description Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum sativum GN=TIC32 PE=1 SV=1
trembl
ID A0A067JRH4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20579 PE=3 SV=1
Gene Ontology
ID GO:0016630
description short-chain dehydrogenase tic chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009164_010 0.0 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Jatropha curcas]
2 Hb_004030_040 0.0430947775 - - PREDICTED: protein NRT1/ PTR FAMILY 2.8 [Jatropha curcas]
3 Hb_002757_030 0.0461580712 - - unnamed protein product [Vitis vinifera]
4 Hb_002757_040 0.0562053013 - - -
5 Hb_000594_010 0.0638331639 - - PREDICTED: lysine histidine transporter-like 6 isoform X3 [Populus euphratica]
6 Hb_010327_060 0.0695696138 - - hypothetical protein B456_001G246300 [Gossypium raimondii]
7 Hb_006651_020 0.0699049779 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
8 Hb_000155_130 0.076578985 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000480_020 0.0783195228 - - conserved hypothetical protein [Ricinus communis]
10 Hb_019953_010 0.0803608223 - - hypothetical protein CICLE_v10019877mg [Citrus clementina]
11 Hb_092655_010 0.0867314173 - - PREDICTED: uncharacterized protein LOC105650151 [Jatropha curcas]
12 Hb_000487_350 0.0868218309 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002734_020 0.0901184842 - - PREDICTED: uncharacterized protein LOC105631540 [Jatropha curcas]
14 Hb_001856_250 0.0910505144 - - PREDICTED: phenolic glucoside malonyltransferase 1-like [Jatropha curcas]
15 Hb_000581_010 0.0916256872 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6-like [Jatropha curcas]
16 Hb_002636_170 0.0939704198 - - DNA-3-methyladenine glycosylase, putative [Ricinus communis]
17 Hb_153544_020 0.096152764 transcription factor TF Family: TCP PREDICTED: transcription factor TCP12 [Jatropha curcas]
18 Hb_000521_030 0.0965800858 - - PREDICTED: uncharacterized protein LOC105650350 [Jatropha curcas]
19 Hb_000422_090 0.0982577135 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005841_070 0.0995486776 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_009164_010 Hb_009164_010 Hb_004030_040 Hb_004030_040 Hb_009164_010--Hb_004030_040 Hb_002757_030 Hb_002757_030 Hb_009164_010--Hb_002757_030 Hb_002757_040 Hb_002757_040 Hb_009164_010--Hb_002757_040 Hb_000594_010 Hb_000594_010 Hb_009164_010--Hb_000594_010 Hb_010327_060 Hb_010327_060 Hb_009164_010--Hb_010327_060 Hb_006651_020 Hb_006651_020 Hb_009164_010--Hb_006651_020 Hb_004030_040--Hb_006651_020 Hb_004030_040--Hb_002757_030 Hb_004030_040--Hb_010327_060 Hb_153544_020 Hb_153544_020 Hb_004030_040--Hb_153544_020 Hb_001856_250 Hb_001856_250 Hb_004030_040--Hb_001856_250 Hb_002757_030--Hb_010327_060 Hb_002757_030--Hb_002757_040 Hb_002757_030--Hb_006651_020 Hb_002757_030--Hb_153544_020 Hb_002757_040--Hb_010327_060 Hb_000028_090 Hb_000028_090 Hb_002757_040--Hb_000028_090 Hb_009620_080 Hb_009620_080 Hb_002757_040--Hb_009620_080 Hb_000868_020 Hb_000868_020 Hb_002757_040--Hb_000868_020 Hb_019953_010 Hb_019953_010 Hb_000594_010--Hb_019953_010 Hb_092655_010 Hb_092655_010 Hb_000594_010--Hb_092655_010 Hb_002636_170 Hb_002636_170 Hb_000594_010--Hb_002636_170 Hb_000696_130 Hb_000696_130 Hb_000594_010--Hb_000696_130 Hb_025107_010 Hb_025107_010 Hb_000594_010--Hb_025107_010 Hb_010327_060--Hb_000868_020 Hb_010327_060--Hb_153544_020 Hb_010327_060--Hb_000028_090 Hb_006651_020--Hb_153544_020 Hb_006651_020--Hb_001856_250 Hb_010833_010 Hb_010833_010 Hb_006651_020--Hb_010833_010 Hb_003754_010 Hb_003754_010 Hb_006651_020--Hb_003754_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.318535 22.8739 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 5.24797

CAGE analysis