Hb_010833_010

Information

Type -
Description -
Location Contig10833: 11826-13584
Sequence    

Annotation

kegg
ID rcu:RCOM_1238330
description Stearoy-ACP desaturase (EC:1.14.19.2)
nr
ID KDP44234.1
description hypothetical protein JCGZ_05701 [Jatropha curcas]
swissprot
ID P22337
description Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Ricinus communis PE=1 SV=1
trembl
ID A0A067LJ27
description Acyl-[acyl-carrier-protein] desaturase OS=Jatropha curcas GN=JCGZ_05701 PE=3 SV=1
Gene Ontology
ID GO:0009507
description stearoyl-acp desaturase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02541: 11837-12015
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010833_010 0.0 - - hypothetical protein JCGZ_05701 [Jatropha curcas]
2 Hb_153544_020 0.0451444395 transcription factor TF Family: TCP PREDICTED: transcription factor TCP12 [Jatropha curcas]
3 Hb_003754_010 0.0594755085 - - hypothetical protein POPTR_0019s09950g [Populus trichocarpa]
4 Hb_006651_020 0.0596619625 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
5 Hb_004957_010 0.0632725917 - - PREDICTED: probable aquaporin NIP-type [Prunus mume]
6 Hb_000997_220 0.0639923614 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA14-like [Jatropha curcas]
7 Hb_010327_060 0.0667949899 - - hypothetical protein B456_001G246300 [Gossypium raimondii]
8 Hb_004030_040 0.0716559177 - - PREDICTED: protein NRT1/ PTR FAMILY 2.8 [Jatropha curcas]
9 Hb_002757_030 0.072629349 - - unnamed protein product [Vitis vinifera]
10 Hb_006249_010 0.075305729 - - hypothetical protein JCGZ_13152 [Jatropha curcas]
11 Hb_001856_250 0.0776929456 - - PREDICTED: phenolic glucoside malonyltransferase 1-like [Jatropha curcas]
12 Hb_000318_500 0.0804209373 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000483_340 0.083842948 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000868_020 0.0839968755 - - -
15 Hb_002734_020 0.084547204 - - PREDICTED: uncharacterized protein LOC105631540 [Jatropha curcas]
16 Hb_001308_010 0.0858214294 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004884_040 0.0878291498 - - hypothetical protein POPTR_0016s12910g [Populus trichocarpa]
18 Hb_002757_040 0.0882398532 - - -
19 Hb_027577_010 0.090658863 - - PREDICTED: uncharacterized protein LOC104779928 [Camelina sativa]
20 Hb_103468_010 0.0914957059 - - protein binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_010833_010 Hb_010833_010 Hb_153544_020 Hb_153544_020 Hb_010833_010--Hb_153544_020 Hb_003754_010 Hb_003754_010 Hb_010833_010--Hb_003754_010 Hb_006651_020 Hb_006651_020 Hb_010833_010--Hb_006651_020 Hb_004957_010 Hb_004957_010 Hb_010833_010--Hb_004957_010 Hb_000997_220 Hb_000997_220 Hb_010833_010--Hb_000997_220 Hb_010327_060 Hb_010327_060 Hb_010833_010--Hb_010327_060 Hb_153544_020--Hb_003754_010 Hb_153544_020--Hb_004957_010 Hb_153544_020--Hb_006651_020 Hb_153544_020--Hb_010327_060 Hb_153544_020--Hb_000997_220 Hb_003754_010--Hb_004957_010 Hb_001308_010 Hb_001308_010 Hb_003754_010--Hb_001308_010 Hb_003754_010--Hb_000997_220 Hb_003754_010--Hb_006651_020 Hb_004030_040 Hb_004030_040 Hb_006651_020--Hb_004030_040 Hb_002757_030 Hb_002757_030 Hb_006651_020--Hb_002757_030 Hb_001856_250 Hb_001856_250 Hb_006651_020--Hb_001856_250 Hb_004957_010--Hb_001308_010 Hb_004957_010--Hb_000997_220 Hb_004957_010--Hb_006651_020 Hb_000997_220--Hb_001308_010 Hb_000483_340 Hb_000483_340 Hb_000997_220--Hb_000483_340 Hb_000997_220--Hb_001856_250 Hb_002757_040 Hb_002757_040 Hb_010327_060--Hb_002757_040 Hb_000868_020 Hb_000868_020 Hb_010327_060--Hb_000868_020 Hb_010327_060--Hb_002757_030 Hb_000028_090 Hb_000028_090 Hb_010327_060--Hb_000028_090 Hb_010327_060--Hb_004030_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0199676 0.881916 17.515 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0663968 0 3.10091

CAGE analysis