Hb_153544_020

Information

Type transcription factor
Description TF Family: TCP
Location Contig153544: 19232-20737
Sequence    

Annotation

kegg
ID pop:POPTR_0010s14030g
description POPTRDRAFT_658950; cycloidea-like protein group 1A
nr
ID XP_012082153.1
description PREDICTED: transcription factor TCP12 [Jatropha curcas]
swissprot
ID A0AQW4
description Transcription factor TCP12 OS=Arabidopsis thaliana GN=TCP12 PE=2 SV=1
trembl
ID A0A067JZQ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18278 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_153544_020 0.0 transcription factor TF Family: TCP PREDICTED: transcription factor TCP12 [Jatropha curcas]
2 Hb_003754_010 0.0370957188 - - hypothetical protein POPTR_0019s09950g [Populus trichocarpa]
3 Hb_004957_010 0.0434167354 - - PREDICTED: probable aquaporin NIP-type [Prunus mume]
4 Hb_010833_010 0.0451444395 - - hypothetical protein JCGZ_05701 [Jatropha curcas]
5 Hb_006651_020 0.0452506564 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
6 Hb_010327_060 0.0507420923 - - hypothetical protein B456_001G246300 [Gossypium raimondii]
7 Hb_000997_220 0.0603637546 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA14-like [Jatropha curcas]
8 Hb_004030_040 0.061676769 - - PREDICTED: protein NRT1/ PTR FAMILY 2.8 [Jatropha curcas]
9 Hb_002757_030 0.0677975364 - - unnamed protein product [Vitis vinifera]
10 Hb_000868_020 0.0693645871 - - -
11 Hb_006249_010 0.0714681894 - - hypothetical protein JCGZ_13152 [Jatropha curcas]
12 Hb_001308_010 0.0734808192 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002757_040 0.0780716966 - - -
14 Hb_001856_250 0.0812227458 - - PREDICTED: phenolic glucoside malonyltransferase 1-like [Jatropha curcas]
15 Hb_000318_500 0.0826296874 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003765_010 0.0863765312 - - berberine bridge enzyme [Hevea brasiliensis]
17 Hb_103468_010 0.0881012171 - - protein binding protein, putative [Ricinus communis]
18 Hb_000483_340 0.0882977401 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002734_020 0.0897631442 - - PREDICTED: uncharacterized protein LOC105631540 [Jatropha curcas]
20 Hb_027577_010 0.0920804568 - - PREDICTED: uncharacterized protein LOC104779928 [Camelina sativa]

Gene co-expression network

sample Hb_153544_020 Hb_153544_020 Hb_003754_010 Hb_003754_010 Hb_153544_020--Hb_003754_010 Hb_004957_010 Hb_004957_010 Hb_153544_020--Hb_004957_010 Hb_010833_010 Hb_010833_010 Hb_153544_020--Hb_010833_010 Hb_006651_020 Hb_006651_020 Hb_153544_020--Hb_006651_020 Hb_010327_060 Hb_010327_060 Hb_153544_020--Hb_010327_060 Hb_000997_220 Hb_000997_220 Hb_153544_020--Hb_000997_220 Hb_003754_010--Hb_004957_010 Hb_001308_010 Hb_001308_010 Hb_003754_010--Hb_001308_010 Hb_003754_010--Hb_000997_220 Hb_003754_010--Hb_010833_010 Hb_003754_010--Hb_006651_020 Hb_004957_010--Hb_001308_010 Hb_004957_010--Hb_000997_220 Hb_004957_010--Hb_006651_020 Hb_004957_010--Hb_010833_010 Hb_010833_010--Hb_006651_020 Hb_010833_010--Hb_000997_220 Hb_010833_010--Hb_010327_060 Hb_004030_040 Hb_004030_040 Hb_006651_020--Hb_004030_040 Hb_002757_030 Hb_002757_030 Hb_006651_020--Hb_002757_030 Hb_001856_250 Hb_001856_250 Hb_006651_020--Hb_001856_250 Hb_002757_040 Hb_002757_040 Hb_010327_060--Hb_002757_040 Hb_000868_020 Hb_000868_020 Hb_010327_060--Hb_000868_020 Hb_010327_060--Hb_002757_030 Hb_000028_090 Hb_000028_090 Hb_010327_060--Hb_000028_090 Hb_010327_060--Hb_004030_040 Hb_000997_220--Hb_001308_010 Hb_000483_340 Hb_000483_340 Hb_000997_220--Hb_000483_340 Hb_000997_220--Hb_001856_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0310219 0.59842 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.102344

CAGE analysis