Hb_000594_010

Information

Type -
Description -
Location Contig594: 8022-8725
Sequence    

Annotation

kegg
ID pop:POPTR_0010s13840g
description POPTRDRAFT_833630; lysine and histidine specific transporter family protein
nr
ID XP_011008395.1
description PREDICTED: lysine histidine transporter-like 6 isoform X3 [Populus euphratica]
swissprot
ID Q9C6M2
description Lysine histidine transporter-like 6 OS=Arabidopsis thaliana GN=At1g25530 PE=2 SV=1
trembl
ID B9HWL0
description Lysine and histidine specific transporter family protein OS=Populus trichocarpa GN=POPTR_0010s13840g PE=4 SV=2
Gene Ontology
ID GO:0016021
description lysine histidine transporter-like 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000594_010 0.0 - - PREDICTED: lysine histidine transporter-like 6 isoform X3 [Populus euphratica]
2 Hb_009164_010 0.0638331639 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Jatropha curcas]
3 Hb_019953_010 0.0669476307 - - hypothetical protein CICLE_v10019877mg [Citrus clementina]
4 Hb_092655_010 0.0701773055 - - PREDICTED: uncharacterized protein LOC105650151 [Jatropha curcas]
5 Hb_002636_170 0.0737453738 - - DNA-3-methyladenine glycosylase, putative [Ricinus communis]
6 Hb_000696_130 0.0776739775 - - nucleic acid binding protein, putative [Ricinus communis]
7 Hb_025107_010 0.0843257906 - - PREDICTED: alkaline/neutral invertase CINV2-like [Sesamum indicum]
8 Hb_000487_350 0.0853469885 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000581_010 0.0864050525 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6-like [Jatropha curcas]
10 Hb_004030_040 0.0877732946 - - PREDICTED: protein NRT1/ PTR FAMILY 2.8 [Jatropha curcas]
11 Hb_005043_040 0.0887125583 - - hypothetical protein POPTR_0004s17180g [Populus trichocarpa]
12 Hb_000024_100 0.0887948427 - - PREDICTED: uncharacterized protein LOC105631348 [Jatropha curcas]
13 Hb_000155_130 0.0926827494 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000422_090 0.0948551329 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002757_030 0.0957969333 - - unnamed protein product [Vitis vinifera]
16 Hb_000480_020 0.0974351833 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003788_030 0.1015738276 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
18 Hb_002660_180 0.1045639485 - - conserved hypothetical protein [Ricinus communis]
19 Hb_006651_020 0.1088457717 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
20 Hb_002031_020 0.1091582596 - - hypothetical protein JCGZ_19971 [Jatropha curcas]

Gene co-expression network

sample Hb_000594_010 Hb_000594_010 Hb_009164_010 Hb_009164_010 Hb_000594_010--Hb_009164_010 Hb_019953_010 Hb_019953_010 Hb_000594_010--Hb_019953_010 Hb_092655_010 Hb_092655_010 Hb_000594_010--Hb_092655_010 Hb_002636_170 Hb_002636_170 Hb_000594_010--Hb_002636_170 Hb_000696_130 Hb_000696_130 Hb_000594_010--Hb_000696_130 Hb_025107_010 Hb_025107_010 Hb_000594_010--Hb_025107_010 Hb_004030_040 Hb_004030_040 Hb_009164_010--Hb_004030_040 Hb_002757_030 Hb_002757_030 Hb_009164_010--Hb_002757_030 Hb_002757_040 Hb_002757_040 Hb_009164_010--Hb_002757_040 Hb_010327_060 Hb_010327_060 Hb_009164_010--Hb_010327_060 Hb_006651_020 Hb_006651_020 Hb_009164_010--Hb_006651_020 Hb_033149_010 Hb_033149_010 Hb_019953_010--Hb_033149_010 Hb_019953_010--Hb_002636_170 Hb_019953_010--Hb_000696_130 Hb_006634_120 Hb_006634_120 Hb_019953_010--Hb_006634_120 Hb_000422_090 Hb_000422_090 Hb_019953_010--Hb_000422_090 Hb_092655_010--Hb_025107_010 Hb_005043_040 Hb_005043_040 Hb_092655_010--Hb_005043_040 Hb_000024_100 Hb_000024_100 Hb_092655_010--Hb_000024_100 Hb_000155_130 Hb_000155_130 Hb_092655_010--Hb_000155_130 Hb_000480_020 Hb_000480_020 Hb_092655_010--Hb_000480_020 Hb_002636_170--Hb_000696_130 Hb_002636_170--Hb_000422_090 Hb_002660_180 Hb_002660_180 Hb_002636_170--Hb_002660_180 Hb_000037_150 Hb_000037_150 Hb_002636_170--Hb_000037_150 Hb_024074_030 Hb_024074_030 Hb_002636_170--Hb_024074_030 Hb_000696_130--Hb_002660_180 Hb_000696_130--Hb_000422_090 Hb_000696_130--Hb_000037_150 Hb_000696_130--Hb_024074_030 Hb_025107_010--Hb_005043_040 Hb_025107_010--Hb_000024_100 Hb_151052_010 Hb_151052_010 Hb_025107_010--Hb_151052_010 Hb_005653_010 Hb_005653_010 Hb_025107_010--Hb_005653_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0693305 8.04286 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0341266 2.39903

CAGE analysis