Hb_005043_040

Information

Type -
Description -
Location Contig5043: 22544-26228
Sequence    

Annotation

kegg
ID pop:POPTR_0004s17180g
description POPTRDRAFT_556560; hypothetical protein
nr
ID XP_002306150.1
description hypothetical protein POPTR_0004s17180g [Populus trichocarpa]
swissprot
ID Q9FJF6
description Auxin-responsive protein SAUR23 OS=Arabidopsis thaliana GN=SAUR23 PE=2 SV=1
trembl
ID B9H100
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s17180g PE=4 SV=1
Gene Ontology
ID GO:0009733
description saur-like auxin-responsive protein family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005043_040 0.0 - - hypothetical protein POPTR_0004s17180g [Populus trichocarpa]
2 Hb_000024_100 0.0001349222 - - PREDICTED: uncharacterized protein LOC105631348 [Jatropha curcas]
3 Hb_025107_010 0.0075407062 - - PREDICTED: alkaline/neutral invertase CINV2-like [Sesamum indicum]
4 Hb_151052_010 0.0486185154 - - -
5 Hb_005653_010 0.048707901 - - CEN-like protein 2 [Jatropha curcas]
6 Hb_092655_010 0.0558639209 - - PREDICTED: uncharacterized protein LOC105650151 [Jatropha curcas]
7 Hb_000500_250 0.085070351 - - hypothetical protein CISIN_1g006096mg [Citrus sinensis]
8 Hb_020178_030 0.0870123852 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000594_010 0.0887125583 - - PREDICTED: lysine histidine transporter-like 6 isoform X3 [Populus euphratica]
10 Hb_025311_010 0.0891832977 - - -
11 Hb_005375_080 0.091723988 - - PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase-like [Jatropha curcas]
12 Hb_019953_010 0.0956457555 - - hypothetical protein CICLE_v10019877mg [Citrus clementina]
13 Hb_000101_230 0.0990476343 - - hypothetical protein CICLE_v10030840mg [Citrus clementina]
14 Hb_000286_120 0.0999190674 - - PREDICTED: uncharacterized protein LOC105633393 [Jatropha curcas]
15 Hb_002636_170 0.1044036585 - - DNA-3-methyladenine glycosylase, putative [Ricinus communis]
16 Hb_000696_130 0.1046229868 - - nucleic acid binding protein, putative [Ricinus communis]
17 Hb_006634_120 0.1082839559 - - PREDICTED: protein trichome birefringence-like 3 [Jatropha curcas]
18 Hb_024074_030 0.112467723 - - hypothetical protein CISIN_1g043166mg [Citrus sinensis]
19 Hb_002660_180 0.1139959794 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000155_130 0.1148854687 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005043_040 Hb_005043_040 Hb_000024_100 Hb_000024_100 Hb_005043_040--Hb_000024_100 Hb_025107_010 Hb_025107_010 Hb_005043_040--Hb_025107_010 Hb_151052_010 Hb_151052_010 Hb_005043_040--Hb_151052_010 Hb_005653_010 Hb_005653_010 Hb_005043_040--Hb_005653_010 Hb_092655_010 Hb_092655_010 Hb_005043_040--Hb_092655_010 Hb_000500_250 Hb_000500_250 Hb_005043_040--Hb_000500_250 Hb_000024_100--Hb_025107_010 Hb_000024_100--Hb_151052_010 Hb_000024_100--Hb_005653_010 Hb_000024_100--Hb_092655_010 Hb_000024_100--Hb_000500_250 Hb_025107_010--Hb_092655_010 Hb_025107_010--Hb_151052_010 Hb_025107_010--Hb_005653_010 Hb_000594_010 Hb_000594_010 Hb_025107_010--Hb_000594_010 Hb_151052_010--Hb_005653_010 Hb_151052_010--Hb_000500_250 Hb_020178_030 Hb_020178_030 Hb_151052_010--Hb_020178_030 Hb_025311_010 Hb_025311_010 Hb_151052_010--Hb_025311_010 Hb_005375_080 Hb_005375_080 Hb_151052_010--Hb_005375_080 Hb_005653_010--Hb_000500_250 Hb_005653_010--Hb_020178_030 Hb_005653_010--Hb_025311_010 Hb_005653_010--Hb_005375_080 Hb_000155_130 Hb_000155_130 Hb_092655_010--Hb_000155_130 Hb_000480_020 Hb_000480_020 Hb_092655_010--Hb_000480_020 Hb_092655_010--Hb_000594_010 Hb_000500_250--Hb_020178_030 Hb_000500_250--Hb_025311_010 Hb_000500_250--Hb_005375_080 Hb_000101_230 Hb_000101_230 Hb_000500_250--Hb_000101_230 Hb_000286_120 Hb_000286_120 Hb_000500_250--Hb_000286_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.65892 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.263634

CAGE analysis