Hb_000101_230

Information

Type -
Description -
Location Contig101: 248365-249078
Sequence    

Annotation

kegg
ID cic:CICLE_v10030840mg
description hypothetical protein
nr
ID XP_006437545.1
description hypothetical protein CICLE_v10030840mg [Citrus clementina]
swissprot
ID -
description -
trembl
ID K3YND1
description Uncharacterized protein OS=Setaria italica GN=Si015772m.g PE=4 SV=1
Gene Ontology
ID GO:0016772
description probable lrr receptor-like serine threonine-protein kinase at3g47570

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000101_230 0.0 - - hypothetical protein CICLE_v10030840mg [Citrus clementina]
2 Hb_000286_120 0.0008749543 - - PREDICTED: uncharacterized protein LOC105633393 [Jatropha curcas]
3 Hb_005375_080 0.0073509973 - - PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase-like [Jatropha curcas]
4 Hb_025311_010 0.0099002325 - - -
5 Hb_020178_030 0.0120780574 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000500_250 0.01402597 - - hypothetical protein CISIN_1g006096mg [Citrus sinensis]
7 Hb_002311_420 0.0235320165 - - hypothetical protein JCGZ_18919 [Jatropha curcas]
8 Hb_000137_120 0.0306887317 - - hypothetical protein JCGZ_15021 [Jatropha curcas]
9 Hb_005653_010 0.0504434332 - - CEN-like protein 2 [Jatropha curcas]
10 Hb_151052_010 0.0505328209 - - -
11 Hb_143373_010 0.0608047155 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 [Gossypium raimondii]
12 Hb_000107_020 0.0744516827 - - PREDICTED: uncharacterized protein LOC105032542 [Elaeis guineensis]
13 Hb_007674_020 0.0828300903 - - PREDICTED: serpin-ZX-like [Jatropha curcas]
14 Hb_000272_080 0.0857304521 - - temperature-induced lipocalin [Populus tremula x Populus tremuloides]
15 Hb_002105_060 0.087133945 - - hypothetical protein POPTR_0022s00320g [Populus trichocarpa]
16 Hb_078038_010 0.0955597782 - - hypothetical protein CISIN_1g038197mg [Citrus sinensis]
17 Hb_004713_040 0.0973647841 - - hypothetical protein JCGZ_22567 [Jatropha curcas]
18 Hb_000024_100 0.0989133038 - - PREDICTED: uncharacterized protein LOC105631348 [Jatropha curcas]
19 Hb_005043_040 0.0990476343 - - hypothetical protein POPTR_0004s17180g [Populus trichocarpa]
20 Hb_112765_010 0.1004239864 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000101_230 Hb_000101_230 Hb_000286_120 Hb_000286_120 Hb_000101_230--Hb_000286_120 Hb_005375_080 Hb_005375_080 Hb_000101_230--Hb_005375_080 Hb_025311_010 Hb_025311_010 Hb_000101_230--Hb_025311_010 Hb_020178_030 Hb_020178_030 Hb_000101_230--Hb_020178_030 Hb_000500_250 Hb_000500_250 Hb_000101_230--Hb_000500_250 Hb_002311_420 Hb_002311_420 Hb_000101_230--Hb_002311_420 Hb_000286_120--Hb_005375_080 Hb_000286_120--Hb_025311_010 Hb_000286_120--Hb_020178_030 Hb_000286_120--Hb_000500_250 Hb_000286_120--Hb_002311_420 Hb_005375_080--Hb_025311_010 Hb_005375_080--Hb_020178_030 Hb_005375_080--Hb_000500_250 Hb_005375_080--Hb_002311_420 Hb_025311_010--Hb_020178_030 Hb_025311_010--Hb_000500_250 Hb_025311_010--Hb_002311_420 Hb_020178_030--Hb_000500_250 Hb_020178_030--Hb_002311_420 Hb_005653_010 Hb_005653_010 Hb_000500_250--Hb_005653_010 Hb_000137_120 Hb_000137_120 Hb_002311_420--Hb_000137_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.312886 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.205262

CAGE analysis