Hb_000500_250

Information

Type -
Description -
Location Contig500: 175877-176440
Sequence    

Annotation

kegg
ID cit:102611131
description pentatricopeptide repeat-containing protein At5g46460, mitochondrial-like
nr
ID KDO78020.1
description hypothetical protein CISIN_1g006096mg [Citrus sinensis]
swissprot
ID Q9S7F4
description Putative pentatricopeptide repeat-containing protein At2g01510 OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1
trembl
ID A0A067GH73
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g006096mg PE=4 SV=1
Gene Ontology
ID GO:0008568
description pentatricopeptide repeat-containing protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000500_250 0.0 - - hypothetical protein CISIN_1g006096mg [Citrus sinensis]
2 Hb_020178_030 0.0019480395 - - conserved hypothetical protein [Ricinus communis]
3 Hb_025311_010 0.0041259575 - - -
4 Hb_005375_080 0.0066752365 - - PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase-like [Jatropha curcas]
5 Hb_000101_230 0.01402597 - - hypothetical protein CICLE_v10030840mg [Citrus clementina]
6 Hb_000286_120 0.0149008546 - - PREDICTED: uncharacterized protein LOC105633393 [Jatropha curcas]
7 Hb_005653_010 0.0364276582 - - CEN-like protein 2 [Jatropha curcas]
8 Hb_151052_010 0.0365170897 - - -
9 Hb_002311_420 0.0375533312 - - hypothetical protein JCGZ_18919 [Jatropha curcas]
10 Hb_000137_120 0.0447075055 - - hypothetical protein JCGZ_15021 [Jatropha curcas]
11 Hb_143373_010 0.0748072306 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 [Gossypium raimondii]
12 Hb_000024_100 0.0849358719 - - PREDICTED: uncharacterized protein LOC105631348 [Jatropha curcas]
13 Hb_005043_040 0.085070351 - - hypothetical protein POPTR_0004s17180g [Populus trichocarpa]
14 Hb_000107_020 0.0884439354 - - PREDICTED: uncharacterized protein LOC105032542 [Elaeis guineensis]
15 Hb_025107_010 0.0925838375 - - PREDICTED: alkaline/neutral invertase CINV2-like [Sesamum indicum]
16 Hb_007674_020 0.0968151654 - - PREDICTED: serpin-ZX-like [Jatropha curcas]
17 Hb_006634_120 0.0995823198 - - PREDICTED: protein trichome birefringence-like 3 [Jatropha curcas]
18 Hb_000272_080 0.0997128882 - - temperature-induced lipocalin [Populus tremula x Populus tremuloides]
19 Hb_002105_060 0.1011150758 - - hypothetical protein POPTR_0022s00320g [Populus trichocarpa]
20 Hb_004713_040 0.1048050831 - - hypothetical protein JCGZ_22567 [Jatropha curcas]

Gene co-expression network

sample Hb_000500_250 Hb_000500_250 Hb_020178_030 Hb_020178_030 Hb_000500_250--Hb_020178_030 Hb_025311_010 Hb_025311_010 Hb_000500_250--Hb_025311_010 Hb_005375_080 Hb_005375_080 Hb_000500_250--Hb_005375_080 Hb_000101_230 Hb_000101_230 Hb_000500_250--Hb_000101_230 Hb_000286_120 Hb_000286_120 Hb_000500_250--Hb_000286_120 Hb_005653_010 Hb_005653_010 Hb_000500_250--Hb_005653_010 Hb_020178_030--Hb_025311_010 Hb_020178_030--Hb_005375_080 Hb_020178_030--Hb_000101_230 Hb_020178_030--Hb_000286_120 Hb_002311_420 Hb_002311_420 Hb_020178_030--Hb_002311_420 Hb_025311_010--Hb_005375_080 Hb_025311_010--Hb_000101_230 Hb_025311_010--Hb_000286_120 Hb_025311_010--Hb_002311_420 Hb_005375_080--Hb_000101_230 Hb_005375_080--Hb_000286_120 Hb_005375_080--Hb_002311_420 Hb_000101_230--Hb_000286_120 Hb_000101_230--Hb_002311_420 Hb_000286_120--Hb_002311_420 Hb_151052_010 Hb_151052_010 Hb_005653_010--Hb_151052_010 Hb_005653_010--Hb_020178_030 Hb_005653_010--Hb_025311_010 Hb_005653_010--Hb_005375_080 Hb_000024_100 Hb_000024_100 Hb_005653_010--Hb_000024_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 1.05273 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.64536

CAGE analysis