Hb_020178_030

Information

Type -
Description -
Location Contig20178: 19595-19942
Sequence    

Annotation

kegg
ID rcu:RCOM_1591930
description hypothetical protein
nr
ID XP_002510275.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9R7I2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1591930 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020178_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000500_250 0.0019480395 - - hypothetical protein CISIN_1g006096mg [Citrus sinensis]
3 Hb_025311_010 0.0021779248 - - -
4 Hb_005375_080 0.0047272208 - - PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase-like [Jatropha curcas]
5 Hb_000101_230 0.0120780574 - - hypothetical protein CICLE_v10030840mg [Citrus clementina]
6 Hb_000286_120 0.0129529596 - - PREDICTED: uncharacterized protein LOC105633393 [Jatropha curcas]
7 Hb_002311_420 0.0356062775 - - hypothetical protein JCGZ_18919 [Jatropha curcas]
8 Hb_005653_010 0.0383746101 - - CEN-like protein 2 [Jatropha curcas]
9 Hb_151052_010 0.0384640363 - - -
10 Hb_000137_120 0.042760869 - - hypothetical protein JCGZ_15021 [Jatropha curcas]
11 Hb_143373_010 0.0728631206 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 [Gossypium raimondii]
12 Hb_000107_020 0.0865013707 - - PREDICTED: uncharacterized protein LOC105032542 [Elaeis guineensis]
13 Hb_000024_100 0.0868779256 - - PREDICTED: uncharacterized protein LOC105631348 [Jatropha curcas]
14 Hb_005043_040 0.0870123852 - - hypothetical protein POPTR_0004s17180g [Populus trichocarpa]
15 Hb_025107_010 0.0945247278 - - PREDICTED: alkaline/neutral invertase CINV2-like [Sesamum indicum]
16 Hb_007674_020 0.0948736706 - - PREDICTED: serpin-ZX-like [Jatropha curcas]
17 Hb_000272_080 0.0977717851 - - temperature-induced lipocalin [Populus tremula x Populus tremuloides]
18 Hb_002105_060 0.0991741661 - - hypothetical protein POPTR_0022s00320g [Populus trichocarpa]
19 Hb_006634_120 0.1002163321 - - PREDICTED: protein trichome birefringence-like 3 [Jatropha curcas]
20 Hb_004713_040 0.103691571 - - hypothetical protein JCGZ_22567 [Jatropha curcas]

Gene co-expression network

sample Hb_020178_030 Hb_020178_030 Hb_000500_250 Hb_000500_250 Hb_020178_030--Hb_000500_250 Hb_025311_010 Hb_025311_010 Hb_020178_030--Hb_025311_010 Hb_005375_080 Hb_005375_080 Hb_020178_030--Hb_005375_080 Hb_000101_230 Hb_000101_230 Hb_020178_030--Hb_000101_230 Hb_000286_120 Hb_000286_120 Hb_020178_030--Hb_000286_120 Hb_002311_420 Hb_002311_420 Hb_020178_030--Hb_002311_420 Hb_000500_250--Hb_025311_010 Hb_000500_250--Hb_005375_080 Hb_000500_250--Hb_000101_230 Hb_000500_250--Hb_000286_120 Hb_005653_010 Hb_005653_010 Hb_000500_250--Hb_005653_010 Hb_025311_010--Hb_005375_080 Hb_025311_010--Hb_000101_230 Hb_025311_010--Hb_000286_120 Hb_025311_010--Hb_002311_420 Hb_005375_080--Hb_000101_230 Hb_005375_080--Hb_000286_120 Hb_005375_080--Hb_002311_420 Hb_000101_230--Hb_000286_120 Hb_000101_230--Hb_002311_420 Hb_000286_120--Hb_002311_420 Hb_000137_120 Hb_000137_120 Hb_002311_420--Hb_000137_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.559707 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.346376

CAGE analysis