Hb_005375_080

Information

Type -
Description -
Location Contig5375: 78580-79042
Sequence    

Annotation

kegg
ID rcu:RCOM_1340230
description 1-aminocyclopropane-1-carboxylate oxidase, putative (EC:1.14.11.9)
nr
ID XP_012083088.1
description PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase-like [Jatropha curcas]
swissprot
ID Q7XZQ8
description Flavone synthase OS=Petroselinum crispum GN=FNSI PE=1 SV=1
trembl
ID A0A067K031
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14174 PE=3 SV=1
Gene Ontology
ID GO:0005506
description flavonol synthase flavanone 3-hydroxylase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005375_080 0.0 - - PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase-like [Jatropha curcas]
2 Hb_025311_010 0.0025493061 - - -
3 Hb_020178_030 0.0047272208 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000500_250 0.0066752365 - - hypothetical protein CISIN_1g006096mg [Citrus sinensis]
5 Hb_000101_230 0.0073509973 - - hypothetical protein CICLE_v10030840mg [Citrus clementina]
6 Hb_000286_120 0.0082259315 - - PREDICTED: uncharacterized protein LOC105633393 [Jatropha curcas]
7 Hb_002311_420 0.0308810156 - - hypothetical protein JCGZ_18919 [Jatropha curcas]
8 Hb_000137_120 0.0380365329 - - hypothetical protein JCGZ_15021 [Jatropha curcas]
9 Hb_005653_010 0.043098725 - - CEN-like protein 2 [Jatropha curcas]
10 Hb_151052_010 0.0431881373 - - -
11 Hb_143373_010 0.0681445541 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 [Gossypium raimondii]
12 Hb_000107_020 0.0817863926 - - PREDICTED: uncharacterized protein LOC105032542 [Elaeis guineensis]
13 Hb_007674_020 0.0901611906 - - PREDICTED: serpin-ZX-like [Jatropha curcas]
14 Hb_000024_100 0.0915895773 - - PREDICTED: uncharacterized protein LOC105631348 [Jatropha curcas]
15 Hb_005043_040 0.091723988 - - hypothetical protein POPTR_0004s17180g [Populus trichocarpa]
16 Hb_000272_080 0.0930602217 - - temperature-induced lipocalin [Populus tremula x Populus tremuloides]
17 Hb_002105_060 0.0944630559 - - hypothetical protein POPTR_0022s00320g [Populus trichocarpa]
18 Hb_025107_010 0.0992334679 - - PREDICTED: alkaline/neutral invertase CINV2-like [Sesamum indicum]
19 Hb_004713_040 0.1010926892 - - hypothetical protein JCGZ_22567 [Jatropha curcas]
20 Hb_006634_120 0.1018917036 - - PREDICTED: protein trichome birefringence-like 3 [Jatropha curcas]

Gene co-expression network

sample Hb_005375_080 Hb_005375_080 Hb_025311_010 Hb_025311_010 Hb_005375_080--Hb_025311_010 Hb_020178_030 Hb_020178_030 Hb_005375_080--Hb_020178_030 Hb_000500_250 Hb_000500_250 Hb_005375_080--Hb_000500_250 Hb_000101_230 Hb_000101_230 Hb_005375_080--Hb_000101_230 Hb_000286_120 Hb_000286_120 Hb_005375_080--Hb_000286_120 Hb_002311_420 Hb_002311_420 Hb_005375_080--Hb_002311_420 Hb_025311_010--Hb_020178_030 Hb_025311_010--Hb_000500_250 Hb_025311_010--Hb_000101_230 Hb_025311_010--Hb_000286_120 Hb_025311_010--Hb_002311_420 Hb_020178_030--Hb_000500_250 Hb_020178_030--Hb_000101_230 Hb_020178_030--Hb_000286_120 Hb_020178_030--Hb_002311_420 Hb_000500_250--Hb_000101_230 Hb_000500_250--Hb_000286_120 Hb_005653_010 Hb_005653_010 Hb_000500_250--Hb_005653_010 Hb_000101_230--Hb_000286_120 Hb_000101_230--Hb_002311_420 Hb_000286_120--Hb_002311_420 Hb_000137_120 Hb_000137_120 Hb_002311_420--Hb_000137_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.610964 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.386846

CAGE analysis