Hb_000024_100

Information

Type -
Description -
Location Contig24: 86225-86599
Sequence    

Annotation

kegg
ID rcu:RCOM_0683580
description hypothetical protein
nr
ID XP_012068824.1
description PREDICTED: uncharacterized protein LOC105631348 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L984
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24653 PE=4 SV=1
Gene Ontology
ID GO:0009733
description auxin-responsive family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000024_100 0.0 - - PREDICTED: uncharacterized protein LOC105631348 [Jatropha curcas]
2 Hb_005043_040 0.0001349222 - - hypothetical protein POPTR_0004s17180g [Populus trichocarpa]
3 Hb_025107_010 0.0076756244 - - PREDICTED: alkaline/neutral invertase CINV2-like [Sesamum indicum]
4 Hb_151052_010 0.0484837439 - - -
5 Hb_005653_010 0.04857313 - - CEN-like protein 2 [Jatropha curcas]
6 Hb_092655_010 0.055998615 - - PREDICTED: uncharacterized protein LOC105650151 [Jatropha curcas]
7 Hb_000500_250 0.0849358719 - - hypothetical protein CISIN_1g006096mg [Citrus sinensis]
8 Hb_020178_030 0.0868779256 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000594_010 0.0887948427 - - PREDICTED: lysine histidine transporter-like 6 isoform X3 [Populus euphratica]
10 Hb_025311_010 0.0890488603 - - -
11 Hb_005375_080 0.0915895773 - - PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase-like [Jatropha curcas]
12 Hb_019953_010 0.0956760752 - - hypothetical protein CICLE_v10019877mg [Citrus clementina]
13 Hb_000101_230 0.0989133038 - - hypothetical protein CICLE_v10030840mg [Citrus clementina]
14 Hb_000286_120 0.0997847469 - - PREDICTED: uncharacterized protein LOC105633393 [Jatropha curcas]
15 Hb_002636_170 0.1044390572 - - DNA-3-methyladenine glycosylase, putative [Ricinus communis]
16 Hb_000696_130 0.1046456028 - - nucleic acid binding protein, putative [Ricinus communis]
17 Hb_006634_120 0.1082182943 - - PREDICTED: protein trichome birefringence-like 3 [Jatropha curcas]
18 Hb_024074_030 0.1124349349 - - hypothetical protein CISIN_1g043166mg [Citrus sinensis]
19 Hb_002660_180 0.11399128 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000155_130 0.115019344 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000024_100 Hb_000024_100 Hb_005043_040 Hb_005043_040 Hb_000024_100--Hb_005043_040 Hb_025107_010 Hb_025107_010 Hb_000024_100--Hb_025107_010 Hb_151052_010 Hb_151052_010 Hb_000024_100--Hb_151052_010 Hb_005653_010 Hb_005653_010 Hb_000024_100--Hb_005653_010 Hb_092655_010 Hb_092655_010 Hb_000024_100--Hb_092655_010 Hb_000500_250 Hb_000500_250 Hb_000024_100--Hb_000500_250 Hb_005043_040--Hb_025107_010 Hb_005043_040--Hb_151052_010 Hb_005043_040--Hb_005653_010 Hb_005043_040--Hb_092655_010 Hb_005043_040--Hb_000500_250 Hb_025107_010--Hb_092655_010 Hb_025107_010--Hb_151052_010 Hb_025107_010--Hb_005653_010 Hb_000594_010 Hb_000594_010 Hb_025107_010--Hb_000594_010 Hb_151052_010--Hb_005653_010 Hb_151052_010--Hb_000500_250 Hb_020178_030 Hb_020178_030 Hb_151052_010--Hb_020178_030 Hb_025311_010 Hb_025311_010 Hb_151052_010--Hb_025311_010 Hb_005375_080 Hb_005375_080 Hb_151052_010--Hb_005375_080 Hb_005653_010--Hb_000500_250 Hb_005653_010--Hb_020178_030 Hb_005653_010--Hb_025311_010 Hb_005653_010--Hb_005375_080 Hb_000155_130 Hb_000155_130 Hb_092655_010--Hb_000155_130 Hb_000480_020 Hb_000480_020 Hb_092655_010--Hb_000480_020 Hb_092655_010--Hb_000594_010 Hb_000500_250--Hb_020178_030 Hb_000500_250--Hb_025311_010 Hb_000500_250--Hb_005375_080 Hb_000101_230 Hb_000101_230 Hb_000500_250--Hb_000101_230 Hb_000286_120 Hb_000286_120 Hb_000500_250--Hb_000286_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 2.28764 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.915929

CAGE analysis