Hb_006634_120

Information

Type -
Description -
Location Contig6634: 118634-119986
Sequence    

Annotation

kegg
ID pop:POPTR_0016s12660g
description POPTRDRAFT_668061; hypothetical protein
nr
ID XP_012087829.1
description PREDICTED: protein trichome birefringence-like 3 [Jatropha curcas]
swissprot
ID Q8LED3
description Protein trichome birefringence-like 3 OS=Arabidopsis thaliana GN=TBL3 PE=2 SV=1
trembl
ID B9IGB9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s12660g PE=4 SV=1
Gene Ontology
ID GO:0005794
description protein trichome birefringence-like 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53119: 118714-119039
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006634_120 0.0 - - PREDICTED: protein trichome birefringence-like 3 [Jatropha curcas]
2 Hb_064445_040 0.047351104 - - hypothetical protein POPTR_0005s09430g [Populus trichocarpa]
3 Hb_024074_030 0.0761809461 - - hypothetical protein CISIN_1g043166mg [Citrus sinensis]
4 Hb_010288_010 0.0770740749 - - Beta-glucosidase, putative [Ricinus communis]
5 Hb_000007_190 0.0778864071 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 10-like [Jatropha curcas]
6 Hb_019953_010 0.0791577155 - - hypothetical protein CICLE_v10019877mg [Citrus clementina]
7 Hb_000392_500 0.0792162375 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000037_150 0.0804743894 - - PREDICTED: disease resistance response protein 206-like [Jatropha curcas]
9 Hb_001477_050 0.0823734356 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
10 Hb_000805_050 0.0846646866 - - zinc transporter, putative [Ricinus communis]
11 Hb_033149_010 0.0878724062 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
12 Hb_002660_180 0.0908050548 - - conserved hypothetical protein [Ricinus communis]
13 Hb_005653_010 0.0945099409 - - CEN-like protein 2 [Jatropha curcas]
14 Hb_151052_010 0.0945142802 - - -
15 Hb_010488_050 0.0975606844 transcription factor TF Family: LIM hypothetical protein JCGZ_14428 [Jatropha curcas]
16 Hb_000696_130 0.0987317393 - - nucleic acid binding protein, putative [Ricinus communis]
17 Hb_000500_250 0.0995823198 - - hypothetical protein CISIN_1g006096mg [Citrus sinensis]
18 Hb_002636_170 0.0996569522 - - DNA-3-methyladenine glycosylase, putative [Ricinus communis]
19 Hb_020178_030 0.1002163321 - - conserved hypothetical protein [Ricinus communis]
20 Hb_025311_010 0.1009644739 - - -

Gene co-expression network

sample Hb_006634_120 Hb_006634_120 Hb_064445_040 Hb_064445_040 Hb_006634_120--Hb_064445_040 Hb_024074_030 Hb_024074_030 Hb_006634_120--Hb_024074_030 Hb_010288_010 Hb_010288_010 Hb_006634_120--Hb_010288_010 Hb_000007_190 Hb_000007_190 Hb_006634_120--Hb_000007_190 Hb_019953_010 Hb_019953_010 Hb_006634_120--Hb_019953_010 Hb_000392_500 Hb_000392_500 Hb_006634_120--Hb_000392_500 Hb_064445_040--Hb_000392_500 Hb_064445_040--Hb_000007_190 Hb_064445_040--Hb_010288_010 Hb_135737_010 Hb_135737_010 Hb_064445_040--Hb_135737_010 Hb_103225_040 Hb_103225_040 Hb_064445_040--Hb_103225_040 Hb_002660_180 Hb_002660_180 Hb_024074_030--Hb_002660_180 Hb_000037_150 Hb_000037_150 Hb_024074_030--Hb_000037_150 Hb_001477_050 Hb_001477_050 Hb_024074_030--Hb_001477_050 Hb_000696_130 Hb_000696_130 Hb_024074_030--Hb_000696_130 Hb_002636_170 Hb_002636_170 Hb_024074_030--Hb_002636_170 Hb_001307_180 Hb_001307_180 Hb_024074_030--Hb_001307_180 Hb_010288_010--Hb_000392_500 Hb_010288_010--Hb_000007_190 Hb_050514_030 Hb_050514_030 Hb_010288_010--Hb_050514_030 Hb_010288_010--Hb_135737_010 Hb_000347_060 Hb_000347_060 Hb_010288_010--Hb_000347_060 Hb_000007_190--Hb_000392_500 Hb_000007_190--Hb_103225_040 Hb_152868_020 Hb_152868_020 Hb_000007_190--Hb_152868_020 Hb_003793_010 Hb_003793_010 Hb_000007_190--Hb_003793_010 Hb_033149_010 Hb_033149_010 Hb_019953_010--Hb_033149_010 Hb_019953_010--Hb_002636_170 Hb_000594_010 Hb_000594_010 Hb_019953_010--Hb_000594_010 Hb_019953_010--Hb_000696_130 Hb_000422_090 Hb_000422_090 Hb_019953_010--Hb_000422_090 Hb_000392_500--Hb_103225_040 Hb_000392_500--Hb_152868_020 Hb_000392_500--Hb_135737_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.597774 23.7559 0 0.0342083
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0208751 12.458

CAGE analysis