Hb_010288_010

Information

Type -
Description -
Location Contig10288: 9613-13669
Sequence    

Annotation

kegg
ID rcu:RCOM_1347430
description Beta-glucosidase, putative (EC:3.2.1.21)
nr
ID XP_002515300.1
description Beta-glucosidase, putative [Ricinus communis]
swissprot
ID Q94KD8
description Probable beta-D-xylosidase 2 OS=Arabidopsis thaliana GN=BXL2 PE=2 SV=1
trembl
ID B9RNG1
description Beta-glucosidase, putative OS=Ricinus communis GN=RCOM_1347430 PE=4 SV=1
Gene Ontology
ID GO:0004553
description probable beta-d-xylosidase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01142: 9688-13660
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010288_010 0.0 - - Beta-glucosidase, putative [Ricinus communis]
2 Hb_000392_500 0.046119971 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000007_190 0.0473639373 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 10-like [Jatropha curcas]
4 Hb_064445_040 0.0512309039 - - hypothetical protein POPTR_0005s09430g [Populus trichocarpa]
5 Hb_050514_030 0.0651863993 - - PREDICTED: protein trichome birefringence-like 34 [Jatropha curcas]
6 Hb_135737_010 0.0677400595 - - hypothetical protein POPTR_0004s02760g [Populus trichocarpa]
7 Hb_000347_060 0.0736135974 - - PREDICTED: uncharacterized protein LOC105631356 [Jatropha curcas]
8 Hb_103225_040 0.0755301833 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 12-like [Jatropha curcas]
9 Hb_006634_120 0.0770740749 - - PREDICTED: protein trichome birefringence-like 3 [Jatropha curcas]
10 Hb_152868_020 0.0774645346 - - RecName: Full=2-methylbutanal oxime monooxygenase; AltName: Full=Cytochrome P450 71E7 [Manihot esculenta]
11 Hb_000037_150 0.0813377489 - - PREDICTED: disease resistance response protein 206-like [Jatropha curcas]
12 Hb_010166_010 0.0814969522 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
13 Hb_004846_110 0.0825140725 - - hypothetical protein JCGZ_04591 [Jatropha curcas]
14 Hb_001477_050 0.0866391066 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
15 Hb_001935_060 0.0883328357 - - PREDICTED: metalloendoproteinase 1 [Jatropha curcas]
16 Hb_000964_080 0.0886456485 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Jatropha curcas]
17 Hb_002662_070 0.0903664086 - - hypothetical protein JCGZ_16102 [Jatropha curcas]
18 Hb_001051_060 0.0918135571 - - UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter, putative [Ricinus communis]
19 Hb_000836_640 0.0918313951 - - PREDICTED: uncharacterized protein LOC105644242 [Jatropha curcas]
20 Hb_064396_020 0.0932073693 - - hypothetical protein POPTR_0019s09950g [Populus trichocarpa]

Gene co-expression network

sample Hb_010288_010 Hb_010288_010 Hb_000392_500 Hb_000392_500 Hb_010288_010--Hb_000392_500 Hb_000007_190 Hb_000007_190 Hb_010288_010--Hb_000007_190 Hb_064445_040 Hb_064445_040 Hb_010288_010--Hb_064445_040 Hb_050514_030 Hb_050514_030 Hb_010288_010--Hb_050514_030 Hb_135737_010 Hb_135737_010 Hb_010288_010--Hb_135737_010 Hb_000347_060 Hb_000347_060 Hb_010288_010--Hb_000347_060 Hb_000392_500--Hb_000007_190 Hb_000392_500--Hb_064445_040 Hb_103225_040 Hb_103225_040 Hb_000392_500--Hb_103225_040 Hb_152868_020 Hb_152868_020 Hb_000392_500--Hb_152868_020 Hb_000392_500--Hb_135737_010 Hb_000007_190--Hb_103225_040 Hb_000007_190--Hb_152868_020 Hb_000007_190--Hb_064445_040 Hb_003793_010 Hb_003793_010 Hb_000007_190--Hb_003793_010 Hb_006634_120 Hb_006634_120 Hb_064445_040--Hb_006634_120 Hb_064445_040--Hb_135737_010 Hb_064445_040--Hb_103225_040 Hb_010166_010 Hb_010166_010 Hb_050514_030--Hb_010166_010 Hb_000776_090 Hb_000776_090 Hb_050514_030--Hb_000776_090 Hb_001935_060 Hb_001935_060 Hb_050514_030--Hb_001935_060 Hb_000836_640 Hb_000836_640 Hb_050514_030--Hb_000836_640 Hb_002739_140 Hb_002739_140 Hb_050514_030--Hb_002739_140 Hb_064396_020 Hb_064396_020 Hb_135737_010--Hb_064396_020 Hb_077027_010 Hb_077027_010 Hb_135737_010--Hb_077027_010 Hb_000111_060 Hb_000111_060 Hb_135737_010--Hb_000111_060 Hb_002662_070 Hb_002662_070 Hb_000347_060--Hb_002662_070 Hb_000347_060--Hb_010166_010 Hb_005686_040 Hb_005686_040 Hb_000347_060--Hb_005686_040 Hb_000347_060--Hb_001935_060 Hb_001377_220 Hb_001377_220 Hb_000347_060--Hb_001377_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.4376 5.88731 91.5944 0.0510241 0.0283808
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0750625 54.4576

CAGE analysis