Hb_002662_070

Information

Type -
Description -
Location Contig2662: 82425-83759
Sequence    

Annotation

kegg
ID rcu:RCOM_1589510
description serine-threonine protein kinase, plant-type, putative
nr
ID KDP41695.1
description hypothetical protein JCGZ_16102 [Jatropha curcas]
swissprot
ID Q8W3M4
description Uncharacterized protein At4g06744 OS=Arabidopsis thaliana GN=At4g06744 PE=2 SV=1
trembl
ID A0A067LB27
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16102 PE=4 SV=1
Gene Ontology
ID GO:0016301
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27813: 82369-83932
cDNA
(Sanger)
(ID:Location)		 040_O18.ab1: 82369-83163

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002662_070 0.0 - - hypothetical protein JCGZ_16102 [Jatropha curcas]
2 Hb_001377_220 0.0500474445 - - dopamine beta-monooxygenase, putative [Ricinus communis]
3 Hb_005686_040 0.057687171 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001051_060 0.0602554955 - - UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter, putative [Ricinus communis]
5 Hb_001935_060 0.0638014656 - - PREDICTED: metalloendoproteinase 1 [Jatropha curcas]
6 Hb_000347_060 0.0688819211 - - PREDICTED: uncharacterized protein LOC105631356 [Jatropha curcas]
7 Hb_002835_360 0.0700733731 transcription factor TF Family: MYB hypothetical protein POPTR_0015s09430g [Populus trichocarpa]
8 Hb_003747_160 0.071022946 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002078_180 0.0716601152 - - PREDICTED: 65-kDa microtubule-associated protein 8 [Jatropha curcas]
10 Hb_010166_010 0.0716882904 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
11 Hb_050514_030 0.0746442174 - - PREDICTED: protein trichome birefringence-like 34 [Jatropha curcas]
12 Hb_000086_490 0.0749385491 - - cellulose synthase [Populus tomentosa]
13 Hb_061700_010 0.0759160186 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Prunus mume]
14 Hb_005523_030 0.0816948315 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]
15 Hb_015807_090 0.0833437323 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]
16 Hb_000130_250 0.0849718815 - - PREDICTED: protein trichome birefringence-like 31 [Jatropha curcas]
17 Hb_009476_080 0.0859111947 - - BnaA03g18920D [Brassica napus]
18 Hb_108090_010 0.0861773124 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000172_270 0.0875408125 - - hypothetical protein JCGZ_24087 [Jatropha curcas]
20 Hb_001189_080 0.088691049 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002662_070 Hb_002662_070 Hb_001377_220 Hb_001377_220 Hb_002662_070--Hb_001377_220 Hb_005686_040 Hb_005686_040 Hb_002662_070--Hb_005686_040 Hb_001051_060 Hb_001051_060 Hb_002662_070--Hb_001051_060 Hb_001935_060 Hb_001935_060 Hb_002662_070--Hb_001935_060 Hb_000347_060 Hb_000347_060 Hb_002662_070--Hb_000347_060 Hb_002835_360 Hb_002835_360 Hb_002662_070--Hb_002835_360 Hb_001377_220--Hb_001935_060 Hb_010166_010 Hb_010166_010 Hb_001377_220--Hb_010166_010 Hb_002311_010 Hb_002311_010 Hb_001377_220--Hb_002311_010 Hb_001377_220--Hb_005686_040 Hb_002078_180 Hb_002078_180 Hb_001377_220--Hb_002078_180 Hb_005686_040--Hb_001051_060 Hb_005686_040--Hb_002078_180 Hb_000086_490 Hb_000086_490 Hb_005686_040--Hb_000086_490 Hb_005686_040--Hb_002835_360 Hb_005523_030 Hb_005523_030 Hb_005686_040--Hb_005523_030 Hb_015807_090 Hb_015807_090 Hb_005686_040--Hb_015807_090 Hb_003747_160 Hb_003747_160 Hb_001051_060--Hb_003747_160 Hb_001051_060--Hb_000086_490 Hb_001051_060--Hb_005523_030 Hb_001051_060--Hb_015807_090 Hb_001051_060--Hb_002078_180 Hb_001935_060--Hb_010166_010 Hb_001935_060--Hb_002311_010 Hb_001935_060--Hb_002078_180 Hb_001935_060--Hb_005686_040 Hb_038927_020 Hb_038927_020 Hb_001935_060--Hb_038927_020 Hb_000347_060--Hb_010166_010 Hb_000347_060--Hb_005686_040 Hb_000347_060--Hb_001935_060 Hb_010288_010 Hb_010288_010 Hb_000347_060--Hb_010288_010 Hb_000347_060--Hb_001377_220 Hb_002835_360--Hb_002078_180 Hb_009476_080 Hb_009476_080 Hb_002835_360--Hb_009476_080 Hb_002835_360--Hb_003747_160 Hb_002835_360--Hb_015807_090 Hb_002835_360--Hb_001051_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0312638 0.0856782 0.824748 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.526855

CAGE analysis