Hb_000347_060

Information

Type -
Description -
Location Contig347: 81233-83677
Sequence    

Annotation

kegg
ID rcu:RCOM_0684700
description hypothetical protein
nr
ID XP_012068839.1
description PREDICTED: uncharacterized protein LOC105631356 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9ST64
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0684700 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36176: 81595-81801 , PASA_asmbl_36177: 82222-83102
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000347_060 0.0 - - PREDICTED: uncharacterized protein LOC105631356 [Jatropha curcas]
2 Hb_002662_070 0.0688819211 - - hypothetical protein JCGZ_16102 [Jatropha curcas]
3 Hb_010166_010 0.0704035875 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
4 Hb_005686_040 0.0720653216 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001935_060 0.0730861247 - - PREDICTED: metalloendoproteinase 1 [Jatropha curcas]
6 Hb_010288_010 0.0736135974 - - Beta-glucosidase, putative [Ricinus communis]
7 Hb_001377_220 0.0739725481 - - dopamine beta-monooxygenase, putative [Ricinus communis]
8 Hb_061700_010 0.0764816335 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Prunus mume]
9 Hb_002078_180 0.0794517989 - - PREDICTED: 65-kDa microtubule-associated protein 8 [Jatropha curcas]
10 Hb_000130_250 0.0807813618 - - PREDICTED: protein trichome birefringence-like 31 [Jatropha curcas]
11 Hb_001051_060 0.0816488078 - - UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter, putative [Ricinus communis]
12 Hb_002835_360 0.0831874866 transcription factor TF Family: MYB hypothetical protein POPTR_0015s09430g [Populus trichocarpa]
13 Hb_001357_290 0.0835698873 - - PREDICTED: uncharacterized protein LOC105632986 [Jatropha curcas]
14 Hb_050514_030 0.0854443291 - - PREDICTED: protein trichome birefringence-like 34 [Jatropha curcas]
15 Hb_001189_080 0.0860291718 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000416_020 0.0861171833 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000173_240 0.0875245651 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000227_360 0.0906287951 - - PREDICTED: mavicyanin [Jatropha curcas]
19 Hb_000964_080 0.0934488386 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Jatropha curcas]
20 Hb_003376_060 0.0938929511 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000347_060 Hb_000347_060 Hb_002662_070 Hb_002662_070 Hb_000347_060--Hb_002662_070 Hb_010166_010 Hb_010166_010 Hb_000347_060--Hb_010166_010 Hb_005686_040 Hb_005686_040 Hb_000347_060--Hb_005686_040 Hb_001935_060 Hb_001935_060 Hb_000347_060--Hb_001935_060 Hb_010288_010 Hb_010288_010 Hb_000347_060--Hb_010288_010 Hb_001377_220 Hb_001377_220 Hb_000347_060--Hb_001377_220 Hb_002662_070--Hb_001377_220 Hb_002662_070--Hb_005686_040 Hb_001051_060 Hb_001051_060 Hb_002662_070--Hb_001051_060 Hb_002662_070--Hb_001935_060 Hb_002835_360 Hb_002835_360 Hb_002662_070--Hb_002835_360 Hb_010166_010--Hb_001935_060 Hb_010166_010--Hb_001377_220 Hb_050514_030 Hb_050514_030 Hb_010166_010--Hb_050514_030 Hb_002311_010 Hb_002311_010 Hb_010166_010--Hb_002311_010 Hb_000416_020 Hb_000416_020 Hb_010166_010--Hb_000416_020 Hb_010166_010--Hb_005686_040 Hb_005686_040--Hb_001051_060 Hb_002078_180 Hb_002078_180 Hb_005686_040--Hb_002078_180 Hb_000086_490 Hb_000086_490 Hb_005686_040--Hb_000086_490 Hb_005686_040--Hb_002835_360 Hb_005523_030 Hb_005523_030 Hb_005686_040--Hb_005523_030 Hb_015807_090 Hb_015807_090 Hb_005686_040--Hb_015807_090 Hb_001935_060--Hb_001377_220 Hb_001935_060--Hb_002311_010 Hb_001935_060--Hb_002078_180 Hb_001935_060--Hb_005686_040 Hb_038927_020 Hb_038927_020 Hb_001935_060--Hb_038927_020 Hb_000392_500 Hb_000392_500 Hb_010288_010--Hb_000392_500 Hb_000007_190 Hb_000007_190 Hb_010288_010--Hb_000007_190 Hb_064445_040 Hb_064445_040 Hb_010288_010--Hb_064445_040 Hb_010288_010--Hb_050514_030 Hb_135737_010 Hb_135737_010 Hb_010288_010--Hb_135737_010 Hb_001377_220--Hb_002311_010 Hb_001377_220--Hb_005686_040 Hb_001377_220--Hb_002078_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0482932 0.325794 2.11245 19.8443 0.0875192 0.0111231
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0259013 0.0203789 0 0.0162359 12.6984

CAGE analysis