Hb_050514_030

Information

Type -
Description -
Location Contig50514: 22509-24396
Sequence    

Annotation

kegg
ID pop:POPTR_0016s13330g
description POPTRDRAFT_777917; hypothetical protein
nr
ID XP_012089835.1
description PREDICTED: protein trichome birefringence-like 34 [Jatropha curcas]
swissprot
ID O80919
description Protein trichome birefringence-like 34 OS=Arabidopsis thaliana GN=TBL34 PE=2 SV=2
trembl
ID B9IGH3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s13330g PE=4 SV=2
Gene Ontology
ID GO:0005794
description protein trichome birefringence-like 34

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46035: 23510-24128
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_050514_030 0.0 - - PREDICTED: protein trichome birefringence-like 34 [Jatropha curcas]
2 Hb_010166_010 0.0520067009 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
3 Hb_000776_090 0.0523738756 - - PREDICTED: COBRA-like protein 4 [Jatropha curcas]
4 Hb_001935_060 0.0595994389 - - PREDICTED: metalloendoproteinase 1 [Jatropha curcas]
5 Hb_000836_640 0.0630106673 - - PREDICTED: uncharacterized protein LOC105644242 [Jatropha curcas]
6 Hb_002739_140 0.064723295 - - PREDICTED: protein TPX2 [Jatropha curcas]
7 Hb_010288_010 0.0651863993 - - Beta-glucosidase, putative [Ricinus communis]
8 Hb_005686_040 0.0665000093 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001377_220 0.0678777758 - - dopamine beta-monooxygenase, putative [Ricinus communis]
10 Hb_001051_060 0.0685217012 - - UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter, putative [Ricinus communis]
11 Hb_010488_050 0.0708725344 transcription factor TF Family: LIM hypothetical protein JCGZ_14428 [Jatropha curcas]
12 Hb_005523_030 0.0720083881 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]
13 Hb_000086_490 0.0731952165 - - cellulose synthase [Populus tomentosa]
14 Hb_001189_080 0.0738572672 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002662_070 0.0746442174 - - hypothetical protein JCGZ_16102 [Jatropha curcas]
16 Hb_003972_070 0.0751862933 - - PREDICTED: cytochrome P450 85A1-like [Citrus sinensis]
17 Hb_001477_050 0.0816590855 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
18 Hb_001500_090 0.0843133152 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002311_010 0.08484318 - - PREDICTED: chitinase-like protein 2 [Jatropha curcas]
20 Hb_000347_060 0.0854443291 - - PREDICTED: uncharacterized protein LOC105631356 [Jatropha curcas]

Gene co-expression network

sample Hb_050514_030 Hb_050514_030 Hb_010166_010 Hb_010166_010 Hb_050514_030--Hb_010166_010 Hb_000776_090 Hb_000776_090 Hb_050514_030--Hb_000776_090 Hb_001935_060 Hb_001935_060 Hb_050514_030--Hb_001935_060 Hb_000836_640 Hb_000836_640 Hb_050514_030--Hb_000836_640 Hb_002739_140 Hb_002739_140 Hb_050514_030--Hb_002739_140 Hb_010288_010 Hb_010288_010 Hb_050514_030--Hb_010288_010 Hb_010166_010--Hb_001935_060 Hb_001377_220 Hb_001377_220 Hb_010166_010--Hb_001377_220 Hb_002311_010 Hb_002311_010 Hb_010166_010--Hb_002311_010 Hb_000416_020 Hb_000416_020 Hb_010166_010--Hb_000416_020 Hb_005686_040 Hb_005686_040 Hb_010166_010--Hb_005686_040 Hb_000776_090--Hb_000836_640 Hb_005523_030 Hb_005523_030 Hb_000776_090--Hb_005523_030 Hb_000086_490 Hb_000086_490 Hb_000776_090--Hb_000086_490 Hb_000776_090--Hb_002739_140 Hb_000162_010 Hb_000162_010 Hb_000776_090--Hb_000162_010 Hb_001935_060--Hb_001377_220 Hb_001935_060--Hb_002311_010 Hb_002078_180 Hb_002078_180 Hb_001935_060--Hb_002078_180 Hb_001935_060--Hb_005686_040 Hb_038927_020 Hb_038927_020 Hb_001935_060--Hb_038927_020 Hb_001477_050 Hb_001477_050 Hb_000836_640--Hb_001477_050 Hb_002750_030 Hb_002750_030 Hb_000836_640--Hb_002750_030 Hb_000836_640--Hb_000162_010 Hb_001307_180 Hb_001307_180 Hb_000836_640--Hb_001307_180 Hb_000836_640--Hb_005523_030 Hb_004920_150 Hb_004920_150 Hb_002739_140--Hb_004920_150 Hb_003972_070 Hb_003972_070 Hb_002739_140--Hb_003972_070 Hb_002739_140--Hb_038927_020 Hb_010488_050 Hb_010488_050 Hb_002739_140--Hb_010488_050 Hb_000392_500 Hb_000392_500 Hb_010288_010--Hb_000392_500 Hb_000007_190 Hb_000007_190 Hb_010288_010--Hb_000007_190 Hb_064445_040 Hb_064445_040 Hb_010288_010--Hb_064445_040 Hb_135737_010 Hb_135737_010 Hb_010288_010--Hb_135737_010 Hb_000347_060 Hb_000347_060 Hb_010288_010--Hb_000347_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.299424 0.611733 12.9941 0.0144745 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 8.6524

CAGE analysis