Hb_000416_020

Information

Type -
Description -
Location Contig416: 33665-36258
Sequence    

Annotation

kegg
ID rcu:RCOM_1252010
description hypothetical protein
nr
ID XP_002522268.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S8E9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1252010 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41135: 33601-34283 , PASA_asmbl_41136: 34327-35112 , PASA_asmbl_41137: 35416-35876
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000416_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_038927_020 0.0485855796 - - PREDICTED: rac-like GTP-binding protein RAC13 [Cucumis melo]
3 Hb_002311_010 0.0523924871 - - PREDICTED: chitinase-like protein 2 [Jatropha curcas]
4 Hb_001935_060 0.0564080948 - - PREDICTED: metalloendoproteinase 1 [Jatropha curcas]
5 Hb_010166_010 0.0577217776 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
6 Hb_158092_090 0.0599950735 - - zinc finger protein, putative [Ricinus communis]
7 Hb_001377_220 0.0637937705 - - dopamine beta-monooxygenase, putative [Ricinus communis]
8 Hb_026198_080 0.0771649761 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 [Populus euphratica]
9 Hb_007281_010 0.0786086207 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
10 Hb_001014_180 0.0787818338 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10 [Jatropha curcas]
11 Hb_009158_040 0.0803317974 - - PREDICTED: auxin-induced protein 15A [Jatropha curcas]
12 Hb_004920_150 0.0834047291 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000173_240 0.0843299956 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002078_180 0.0843777548 - - PREDICTED: 65-kDa microtubule-associated protein 8 [Jatropha curcas]
15 Hb_001053_120 0.0845792179 transcription factor TF Family: MYB PREDICTED: transcription factor MYB46-like [Populus euphratica]
16 Hb_000347_060 0.0861171833 - - PREDICTED: uncharacterized protein LOC105631356 [Jatropha curcas]
17 Hb_002739_140 0.0878719074 - - PREDICTED: protein TPX2 [Jatropha curcas]
18 Hb_001712_030 0.0878821927 - - PREDICTED: lysine-rich arabinogalactan protein 19 [Jatropha curcas]
19 Hb_008705_080 0.0879396181 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
20 Hb_000172_270 0.0893730887 - - hypothetical protein JCGZ_24087 [Jatropha curcas]

Gene co-expression network

sample Hb_000416_020 Hb_000416_020 Hb_038927_020 Hb_038927_020 Hb_000416_020--Hb_038927_020 Hb_002311_010 Hb_002311_010 Hb_000416_020--Hb_002311_010 Hb_001935_060 Hb_001935_060 Hb_000416_020--Hb_001935_060 Hb_010166_010 Hb_010166_010 Hb_000416_020--Hb_010166_010 Hb_158092_090 Hb_158092_090 Hb_000416_020--Hb_158092_090 Hb_001377_220 Hb_001377_220 Hb_000416_020--Hb_001377_220 Hb_038927_020--Hb_002311_010 Hb_038927_020--Hb_001935_060 Hb_007281_010 Hb_007281_010 Hb_038927_020--Hb_007281_010 Hb_038927_020--Hb_001377_220 Hb_002739_140 Hb_002739_140 Hb_038927_020--Hb_002739_140 Hb_002311_010--Hb_001935_060 Hb_002311_010--Hb_007281_010 Hb_002311_010--Hb_001377_220 Hb_002311_010--Hb_010166_010 Hb_001935_060--Hb_001377_220 Hb_001935_060--Hb_010166_010 Hb_002078_180 Hb_002078_180 Hb_001935_060--Hb_002078_180 Hb_005686_040 Hb_005686_040 Hb_001935_060--Hb_005686_040 Hb_010166_010--Hb_001377_220 Hb_050514_030 Hb_050514_030 Hb_010166_010--Hb_050514_030 Hb_010166_010--Hb_005686_040 Hb_158092_090--Hb_002311_010 Hb_001014_180 Hb_001014_180 Hb_158092_090--Hb_001014_180 Hb_158092_090--Hb_038927_020 Hb_158092_090--Hb_007281_010 Hb_001712_030 Hb_001712_030 Hb_158092_090--Hb_001712_030 Hb_002662_070 Hb_002662_070 Hb_001377_220--Hb_002662_070 Hb_001377_220--Hb_005686_040 Hb_001377_220--Hb_002078_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0415774 0.446686 2.06559 20.8082 0.0201409 0.0100466
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0371849 0 0.110998 19.1116

CAGE analysis