Hb_001712_030

Information

Type -
Description -
Location Contig1712: 43154-44206
Sequence    

Annotation

kegg
ID rcu:RCOM_1464010
description hypothetical protein
nr
ID XP_012081997.1
description PREDICTED: lysine-rich arabinogalactan protein 19 [Jatropha curcas]
swissprot
ID Q9S740
description Lysine-rich arabinogalactan protein 19 OS=Arabidopsis thaliana GN=AGP19 PE=2 SV=2
trembl
ID A0A067KBY7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18255 PE=4 SV=1
Gene Ontology
ID GO:0016787
description lysine-rich arabinogalactan protein 19-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16007: 43107-43597
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001712_030 0.0 - - PREDICTED: lysine-rich arabinogalactan protein 19 [Jatropha curcas]
2 Hb_000462_040 0.0574458019 - - ATSMC2, putative [Ricinus communis]
3 Hb_038927_020 0.061231624 - - PREDICTED: rac-like GTP-binding protein RAC13 [Cucumis melo]
4 Hb_002311_010 0.0637149643 - - PREDICTED: chitinase-like protein 2 [Jatropha curcas]
5 Hb_007281_010 0.0660900293 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
6 Hb_000311_100 0.0664511209 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000165_260 0.0702800509 - - PREDICTED: uncharacterized protein LOC105133752 isoform X2 [Populus euphratica]
8 Hb_000328_030 0.0748810888 - - PREDICTED: cellulose synthase A catalytic subunit 7 [UDP-forming] [Jatropha curcas]
9 Hb_000193_320 0.0816877753 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002078_180 0.081710859 - - PREDICTED: 65-kDa microtubule-associated protein 8 [Jatropha curcas]
11 Hb_007227_030 0.0820423667 - - hypothetical protein JCGZ_24975 [Jatropha curcas]
12 Hb_031284_060 0.0843093683 - - PREDICTED: cellulose synthase A catalytic subunit 7 [UDP-forming] [Jatropha curcas]
13 Hb_001935_060 0.0851258067 - - PREDICTED: metalloendoproteinase 1 [Jatropha curcas]
14 Hb_008001_030 0.0858666451 - - PREDICTED: ent-kaurenoic acid oxidase 1-like isoform X1 [Jatropha curcas]
15 Hb_003090_190 0.0865662066 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Nelumbo nucifera]
16 Hb_158092_090 0.0871439005 - - zinc finger protein, putative [Ricinus communis]
17 Hb_001377_220 0.087780277 - - dopamine beta-monooxygenase, putative [Ricinus communis]
18 Hb_005827_020 0.0878532258 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g49770 [Populus euphratica]
19 Hb_000416_020 0.0878821927 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001014_180 0.0911608414 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10 [Jatropha curcas]

Gene co-expression network

sample Hb_001712_030 Hb_001712_030 Hb_000462_040 Hb_000462_040 Hb_001712_030--Hb_000462_040 Hb_038927_020 Hb_038927_020 Hb_001712_030--Hb_038927_020 Hb_002311_010 Hb_002311_010 Hb_001712_030--Hb_002311_010 Hb_007281_010 Hb_007281_010 Hb_001712_030--Hb_007281_010 Hb_000311_100 Hb_000311_100 Hb_001712_030--Hb_000311_100 Hb_000165_260 Hb_000165_260 Hb_001712_030--Hb_000165_260 Hb_000462_040--Hb_007281_010 Hb_001123_300 Hb_001123_300 Hb_000462_040--Hb_001123_300 Hb_034507_030 Hb_034507_030 Hb_000462_040--Hb_034507_030 Hb_006483_020 Hb_006483_020 Hb_000462_040--Hb_006483_020 Hb_008705_080 Hb_008705_080 Hb_000462_040--Hb_008705_080 Hb_038927_020--Hb_002311_010 Hb_000416_020 Hb_000416_020 Hb_038927_020--Hb_000416_020 Hb_001935_060 Hb_001935_060 Hb_038927_020--Hb_001935_060 Hb_038927_020--Hb_007281_010 Hb_001377_220 Hb_001377_220 Hb_038927_020--Hb_001377_220 Hb_002739_140 Hb_002739_140 Hb_038927_020--Hb_002739_140 Hb_002311_010--Hb_001935_060 Hb_002311_010--Hb_007281_010 Hb_002311_010--Hb_001377_220 Hb_002311_010--Hb_000416_020 Hb_010166_010 Hb_010166_010 Hb_002311_010--Hb_010166_010 Hb_001014_180 Hb_001014_180 Hb_007281_010--Hb_001014_180 Hb_007281_010--Hb_034507_030 Hb_005827_020 Hb_005827_020 Hb_000311_100--Hb_005827_020 Hb_000311_100--Hb_000165_260 Hb_000328_030 Hb_000328_030 Hb_000311_100--Hb_000328_030 Hb_008001_030 Hb_008001_030 Hb_000311_100--Hb_008001_030 Hb_003090_190 Hb_003090_190 Hb_000311_100--Hb_003090_190 Hb_000165_260--Hb_003090_190 Hb_000165_260--Hb_000328_030 Hb_007227_030 Hb_007227_030 Hb_000165_260--Hb_007227_030 Hb_000086_490 Hb_000086_490 Hb_000165_260--Hb_000086_490
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.31363 9.09913 8.91625 111.694 0.190372 0.0698182
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0552898 0.217411 0 1.78676 108.931

CAGE analysis