Hb_000311_100

Information

Type -
Description -
Location Contig311: 110999-111811
Sequence    

Annotation

kegg
ID rcu:RCOM_0769800
description hypothetical protein
nr
ID XP_002533439.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID O22227
description Protein MIZU-KUSSEI 1 OS=Arabidopsis thaliana GN=MIZ1 PE=1 SV=1
trembl
ID B9T5C0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0769800 PE=4 SV=1
Gene Ontology
ID GO:0032541
description protein mizu-kussei 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32943: 111131-111819
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000311_100 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005827_020 0.0551927996 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g49770 [Populus euphratica]
3 Hb_000165_260 0.0591437768 - - PREDICTED: uncharacterized protein LOC105133752 isoform X2 [Populus euphratica]
4 Hb_001712_030 0.0664511209 - - PREDICTED: lysine-rich arabinogalactan protein 19 [Jatropha curcas]
5 Hb_000328_030 0.0729824754 - - PREDICTED: cellulose synthase A catalytic subunit 7 [UDP-forming] [Jatropha curcas]
6 Hb_008001_030 0.0754116368 - - PREDICTED: ent-kaurenoic acid oxidase 1-like isoform X1 [Jatropha curcas]
7 Hb_003090_190 0.0781200957 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Nelumbo nucifera]
8 Hb_000462_040 0.0805707591 - - ATSMC2, putative [Ricinus communis]
9 Hb_007281_010 0.0823528956 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
10 Hb_007227_030 0.0906513032 - - hypothetical protein JCGZ_24975 [Jatropha curcas]
11 Hb_002311_010 0.0915251171 - - PREDICTED: chitinase-like protein 2 [Jatropha curcas]
12 Hb_000193_320 0.0922741237 - - conserved hypothetical protein [Ricinus communis]
13 Hb_031284_060 0.0932553994 - - PREDICTED: cellulose synthase A catalytic subunit 7 [UDP-forming] [Jatropha curcas]
14 Hb_006483_020 0.094049081 - - PREDICTED: PI-PLC X domain-containing protein At5g67130-like isoform X1 [Jatropha curcas]
15 Hb_004117_230 0.0967003939 - - lipid transfer precursor protein [Hevea brasiliensis]
16 Hb_001366_360 0.0972658417 - - catalytic, putative [Ricinus communis]
17 Hb_000086_490 0.0983301441 - - cellulose synthase [Populus tomentosa]
18 Hb_038927_020 0.0988822548 - - PREDICTED: rac-like GTP-binding protein RAC13 [Cucumis melo]
19 Hb_042083_010 0.1007607734 - - PREDICTED: cellulose synthase A catalytic subunit 8 [UDP-forming] [Jatropha curcas]
20 Hb_000776_090 0.1031030527 - - PREDICTED: COBRA-like protein 4 [Jatropha curcas]

Gene co-expression network

sample Hb_000311_100 Hb_000311_100 Hb_005827_020 Hb_005827_020 Hb_000311_100--Hb_005827_020 Hb_000165_260 Hb_000165_260 Hb_000311_100--Hb_000165_260 Hb_001712_030 Hb_001712_030 Hb_000311_100--Hb_001712_030 Hb_000328_030 Hb_000328_030 Hb_000311_100--Hb_000328_030 Hb_008001_030 Hb_008001_030 Hb_000311_100--Hb_008001_030 Hb_003090_190 Hb_003090_190 Hb_000311_100--Hb_003090_190 Hb_000020_180 Hb_000020_180 Hb_005827_020--Hb_000020_180 Hb_005827_020--Hb_008001_030 Hb_000462_040 Hb_000462_040 Hb_005827_020--Hb_000462_040 Hb_005827_020--Hb_001712_030 Hb_005827_020--Hb_000328_030 Hb_000165_260--Hb_003090_190 Hb_000165_260--Hb_000328_030 Hb_007227_030 Hb_007227_030 Hb_000165_260--Hb_007227_030 Hb_000165_260--Hb_001712_030 Hb_000086_490 Hb_000086_490 Hb_000165_260--Hb_000086_490 Hb_001712_030--Hb_000462_040 Hb_038927_020 Hb_038927_020 Hb_001712_030--Hb_038927_020 Hb_002311_010 Hb_002311_010 Hb_001712_030--Hb_002311_010 Hb_007281_010 Hb_007281_010 Hb_001712_030--Hb_007281_010 Hb_000328_030--Hb_000086_490 Hb_001377_230 Hb_001377_230 Hb_000328_030--Hb_001377_230 Hb_042083_010 Hb_042083_010 Hb_000328_030--Hb_042083_010 Hb_005523_030 Hb_005523_030 Hb_000328_030--Hb_005523_030 Hb_015807_090 Hb_015807_090 Hb_000328_030--Hb_015807_090 Hb_008001_030--Hb_000020_180 Hb_001366_360 Hb_001366_360 Hb_008001_030--Hb_001366_360 Hb_008001_030--Hb_001712_030 Hb_008001_030--Hb_003090_190 Hb_003090_190--Hb_000328_030 Hb_000245_110 Hb_000245_110 Hb_003090_190--Hb_000245_110 Hb_000012_380 Hb_000012_380 Hb_003090_190--Hb_000012_380 Hb_003090_190--Hb_015807_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.578697 0.265848 5.44641 0 0.0345096
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0840558 5.11756

CAGE analysis