Hb_000020_180

Information

Type -
Description -
Location Contig20: 329304-340799
Sequence    

Annotation

kegg
ID rcu:RCOM_0452120
description laccase, putative (EC:1.10.3.3)
nr
ID XP_002531562.1
description laccase, putative [Ricinus communis]
swissprot
ID Q5N9X2
description Laccase-4 OS=Oryza sativa subsp. japonica GN=LAC4 PE=2 SV=1
trembl
ID B9SZZ3
description Laccase OS=Ricinus communis GN=RCOM_0452120 PE=3 SV=1
Gene Ontology
ID GO:0048046
description laccase 17

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20165: 330557-331754 , PASA_asmbl_20166: 331822-332925 , PASA_asmbl_20167: 338310-338953 , PASA_asmbl_20168: 339759-340558
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000020_180 0.0 - - laccase, putative [Ricinus communis]
2 Hb_001366_360 0.0678661085 - - catalytic, putative [Ricinus communis]
3 Hb_008001_030 0.078815391 - - PREDICTED: ent-kaurenoic acid oxidase 1-like isoform X1 [Jatropha curcas]
4 Hb_005827_020 0.0842584271 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g49770 [Populus euphratica]
5 Hb_005018_030 0.1055731609 - - hypothetical protein CICLE_v10019811mg [Citrus clementina]
6 Hb_007227_030 0.1071280721 - - hypothetical protein JCGZ_24975 [Jatropha curcas]
7 Hb_000311_100 0.1104978149 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000230_490 0.1149437808 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003090_190 0.1186050057 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Nelumbo nucifera]
10 Hb_000165_260 0.1193739137 - - PREDICTED: uncharacterized protein LOC105133752 isoform X2 [Populus euphratica]
11 Hb_000012_380 0.1195543713 transcription factor TF Family: MYB-related conserved hypothetical protein [Ricinus communis]
12 Hb_001712_030 0.1236446345 - - PREDICTED: lysine-rich arabinogalactan protein 19 [Jatropha curcas]
13 Hb_000245_110 0.1242859796 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 12-like [Jatropha curcas]
14 Hb_001186_040 0.1255876949 - - Peroxidase 3 precursor, putative [Ricinus communis]
15 Hb_000462_040 0.1270441836 - - ATSMC2, putative [Ricinus communis]
16 Hb_000328_030 0.129144908 - - PREDICTED: cellulose synthase A catalytic subunit 7 [UDP-forming] [Jatropha curcas]
17 Hb_077774_010 0.1343530499 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
18 Hb_026124_020 0.1355282943 - - PREDICTED: uncharacterized protein LOC105644241 isoform X1 [Jatropha curcas]
19 Hb_019925_020 0.1358039677 - - electron carrier, putative [Ricinus communis]
20 Hb_001514_050 0.1369984818 - - PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]

Gene co-expression network

sample Hb_000020_180 Hb_000020_180 Hb_001366_360 Hb_001366_360 Hb_000020_180--Hb_001366_360 Hb_008001_030 Hb_008001_030 Hb_000020_180--Hb_008001_030 Hb_005827_020 Hb_005827_020 Hb_000020_180--Hb_005827_020 Hb_005018_030 Hb_005018_030 Hb_000020_180--Hb_005018_030 Hb_007227_030 Hb_007227_030 Hb_000020_180--Hb_007227_030 Hb_000311_100 Hb_000311_100 Hb_000020_180--Hb_000311_100 Hb_001366_360--Hb_008001_030 Hb_001366_360--Hb_007227_030 Hb_000165_260 Hb_000165_260 Hb_001366_360--Hb_000165_260 Hb_001366_360--Hb_000311_100 Hb_001366_360--Hb_005827_020 Hb_008001_030--Hb_000311_100 Hb_001712_030 Hb_001712_030 Hb_008001_030--Hb_001712_030 Hb_008001_030--Hb_005827_020 Hb_003090_190 Hb_003090_190 Hb_008001_030--Hb_003090_190 Hb_005827_020--Hb_000311_100 Hb_000462_040 Hb_000462_040 Hb_005827_020--Hb_000462_040 Hb_005827_020--Hb_001712_030 Hb_000328_030 Hb_000328_030 Hb_005827_020--Hb_000328_030 Hb_012691_060 Hb_012691_060 Hb_005018_030--Hb_012691_060 Hb_019925_020 Hb_019925_020 Hb_005018_030--Hb_019925_020 Hb_000230_490 Hb_000230_490 Hb_005018_030--Hb_000230_490 Hb_000752_040 Hb_000752_040 Hb_005018_030--Hb_000752_040 Hb_005183_030 Hb_005183_030 Hb_005018_030--Hb_005183_030 Hb_007227_030--Hb_000165_260 Hb_007227_030--Hb_000328_030 Hb_002311_010 Hb_002311_010 Hb_007227_030--Hb_002311_010 Hb_007227_030--Hb_001712_030 Hb_007227_030--Hb_003090_190 Hb_000311_100--Hb_000165_260 Hb_000311_100--Hb_001712_030 Hb_000311_100--Hb_000328_030 Hb_000311_100--Hb_003090_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0207422 9.55812 2.99881 35.9899 0.0349764 0.0142446
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0177413 0.392009 42.4174

CAGE analysis