Hb_005827_020

Information

Type -
Description -
Location Contig5827: 39089-44208
Sequence    

Annotation

kegg
ID pop:POPTR_0004s24080g
description hypothetical protein
nr
ID XP_011028445.1
description PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g49770 [Populus euphratica]
swissprot
ID Q9LT96
description Probable leucine-rich repeat receptor-like protein kinase At5g49770 OS=Arabidopsis thaliana GN=At5g49770 PE=2 SV=1
trembl
ID U5GL28
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s24080g PE=3 SV=1
Gene Ontology
ID GO:0004672
description probable leucine-rich repeat receptor-like protein kinase at5g49770

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005827_020 0.0 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g49770 [Populus euphratica]
2 Hb_000311_100 0.0551927996 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000020_180 0.0842584271 - - laccase, putative [Ricinus communis]
4 Hb_008001_030 0.0859263216 - - PREDICTED: ent-kaurenoic acid oxidase 1-like isoform X1 [Jatropha curcas]
5 Hb_000462_040 0.0874036488 - - ATSMC2, putative [Ricinus communis]
6 Hb_001712_030 0.0878532258 - - PREDICTED: lysine-rich arabinogalactan protein 19 [Jatropha curcas]
7 Hb_000328_030 0.0888548474 - - PREDICTED: cellulose synthase A catalytic subunit 7 [UDP-forming] [Jatropha curcas]
8 Hb_000165_260 0.0924982117 - - PREDICTED: uncharacterized protein LOC105133752 isoform X2 [Populus euphratica]
9 Hb_007227_030 0.0956510295 - - hypothetical protein JCGZ_24975 [Jatropha curcas]
10 Hb_006483_020 0.0963953194 - - PREDICTED: PI-PLC X domain-containing protein At5g67130-like isoform X1 [Jatropha curcas]
11 Hb_001366_360 0.097968878 - - catalytic, putative [Ricinus communis]
12 Hb_003090_190 0.1035121544 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Nelumbo nucifera]
13 Hb_007281_010 0.104507337 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
14 Hb_004117_230 0.111095597 - - lipid transfer precursor protein [Hevea brasiliensis]
15 Hb_001709_080 0.1137242865 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
16 Hb_001377_230 0.1152871008 - - PREDICTED: uncharacterized protein LOC105135159 [Populus euphratica]
17 Hb_013407_010 0.115423042 - - hypothetical protein JCGZ_23575 [Jatropha curcas]
18 Hb_042083_010 0.1156819285 - - PREDICTED: cellulose synthase A catalytic subunit 8 [UDP-forming] [Jatropha curcas]
19 Hb_002311_010 0.1159547542 - - PREDICTED: chitinase-like protein 2 [Jatropha curcas]
20 Hb_034507_030 0.1171927755 - - PREDICTED: laccase-4-like [Jatropha curcas]

Gene co-expression network

sample Hb_005827_020 Hb_005827_020 Hb_000311_100 Hb_000311_100 Hb_005827_020--Hb_000311_100 Hb_000020_180 Hb_000020_180 Hb_005827_020--Hb_000020_180 Hb_008001_030 Hb_008001_030 Hb_005827_020--Hb_008001_030 Hb_000462_040 Hb_000462_040 Hb_005827_020--Hb_000462_040 Hb_001712_030 Hb_001712_030 Hb_005827_020--Hb_001712_030 Hb_000328_030 Hb_000328_030 Hb_005827_020--Hb_000328_030 Hb_000165_260 Hb_000165_260 Hb_000311_100--Hb_000165_260 Hb_000311_100--Hb_001712_030 Hb_000311_100--Hb_000328_030 Hb_000311_100--Hb_008001_030 Hb_003090_190 Hb_003090_190 Hb_000311_100--Hb_003090_190 Hb_001366_360 Hb_001366_360 Hb_000020_180--Hb_001366_360 Hb_000020_180--Hb_008001_030 Hb_005018_030 Hb_005018_030 Hb_000020_180--Hb_005018_030 Hb_007227_030 Hb_007227_030 Hb_000020_180--Hb_007227_030 Hb_000020_180--Hb_000311_100 Hb_008001_030--Hb_001366_360 Hb_008001_030--Hb_001712_030 Hb_008001_030--Hb_003090_190 Hb_007281_010 Hb_007281_010 Hb_000462_040--Hb_007281_010 Hb_000462_040--Hb_001712_030 Hb_001123_300 Hb_001123_300 Hb_000462_040--Hb_001123_300 Hb_034507_030 Hb_034507_030 Hb_000462_040--Hb_034507_030 Hb_006483_020 Hb_006483_020 Hb_000462_040--Hb_006483_020 Hb_008705_080 Hb_008705_080 Hb_000462_040--Hb_008705_080 Hb_038927_020 Hb_038927_020 Hb_001712_030--Hb_038927_020 Hb_002311_010 Hb_002311_010 Hb_001712_030--Hb_002311_010 Hb_001712_030--Hb_007281_010 Hb_001712_030--Hb_000165_260 Hb_000086_490 Hb_000086_490 Hb_000328_030--Hb_000086_490 Hb_001377_230 Hb_001377_230 Hb_000328_030--Hb_001377_230 Hb_000328_030--Hb_000165_260 Hb_042083_010 Hb_042083_010 Hb_000328_030--Hb_042083_010 Hb_005523_030 Hb_005523_030 Hb_000328_030--Hb_005523_030 Hb_015807_090 Hb_015807_090 Hb_000328_030--Hb_015807_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.127239 0.0313773 0.862964 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.011767 0.880223

CAGE analysis