Hb_006483_020

Information

Type -
Description -
Location Contig6483: 34400-38178
Sequence    

Annotation

kegg
ID tcc:TCM_000642
description PLC-like phosphodiesterases superfamily protein isoform 1
nr
ID XP_012079242.1
description PREDICTED: PI-PLC X domain-containing protein At5g67130-like isoform X1 [Jatropha curcas]
swissprot
ID Q93XX5
description PI-PLC X domain-containing protein At5g67130 OS=Arabidopsis thaliana GN=At5g67130 PE=1 SV=1
trembl
ID A0A067K6S3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12407 PE=4 SV=1
Gene Ontology
ID GO:0005886
description pi-plc x domain-containing protein at5g67130-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52439: 37756-38242
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006483_020 0.0 - - PREDICTED: PI-PLC X domain-containing protein At5g67130-like isoform X1 [Jatropha curcas]
2 Hb_034507_030 0.0484534874 - - PREDICTED: laccase-4-like [Jatropha curcas]
3 Hb_004994_230 0.0638393661 transcription factor TF Family: LIM Pollen-specific protein SF3, putative [Ricinus communis]
4 Hb_000462_040 0.0648745885 - - ATSMC2, putative [Ricinus communis]
5 Hb_004117_230 0.0681582179 - - lipid transfer precursor protein [Hevea brasiliensis]
6 Hb_000090_010 0.0769912271 - - hypothetical protein JCGZ_22567 [Jatropha curcas]
7 Hb_007281_010 0.0782689422 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
8 Hb_001014_180 0.0808021866 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10 [Jatropha curcas]
9 Hb_028818_020 0.0824396887 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9-like [Jatropha curcas]
10 Hb_001123_300 0.0868788864 - - hypothetical protein POPTR_0003s16270g [Populus trichocarpa]
11 Hb_000805_060 0.0903285809 - - laccase, putative [Ricinus communis]
12 Hb_000311_100 0.094049081 - - conserved hypothetical protein [Ricinus communis]
13 Hb_005827_020 0.0963953194 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g49770 [Populus euphratica]
14 Hb_008705_080 0.0994526283 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
15 Hb_101705_040 0.1012528091 - - cytochrome P450, putative [Ricinus communis]
16 Hb_003972_070 0.1019834364 - - PREDICTED: cytochrome P450 85A1-like [Citrus sinensis]
17 Hb_001712_030 0.102066465 - - PREDICTED: lysine-rich arabinogalactan protein 19 [Jatropha curcas]
18 Hb_004920_150 0.1034711602 - - conserved hypothetical protein [Ricinus communis]
19 Hb_038927_020 0.1066919708 - - PREDICTED: rac-like GTP-binding protein RAC13 [Cucumis melo]
20 Hb_002311_010 0.1090471708 - - PREDICTED: chitinase-like protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_006483_020 Hb_006483_020 Hb_034507_030 Hb_034507_030 Hb_006483_020--Hb_034507_030 Hb_004994_230 Hb_004994_230 Hb_006483_020--Hb_004994_230 Hb_000462_040 Hb_000462_040 Hb_006483_020--Hb_000462_040 Hb_004117_230 Hb_004117_230 Hb_006483_020--Hb_004117_230 Hb_000090_010 Hb_000090_010 Hb_006483_020--Hb_000090_010 Hb_007281_010 Hb_007281_010 Hb_006483_020--Hb_007281_010 Hb_034507_030--Hb_004994_230 Hb_001014_180 Hb_001014_180 Hb_034507_030--Hb_001014_180 Hb_034507_030--Hb_000090_010 Hb_034507_030--Hb_000462_040 Hb_034507_030--Hb_007281_010 Hb_004994_230--Hb_000090_010 Hb_101705_040 Hb_101705_040 Hb_004994_230--Hb_101705_040 Hb_002311_020 Hb_002311_020 Hb_004994_230--Hb_002311_020 Hb_000805_060 Hb_000805_060 Hb_004994_230--Hb_000805_060 Hb_000462_040--Hb_007281_010 Hb_001712_030 Hb_001712_030 Hb_000462_040--Hb_001712_030 Hb_001123_300 Hb_001123_300 Hb_000462_040--Hb_001123_300 Hb_008705_080 Hb_008705_080 Hb_000462_040--Hb_008705_080 Hb_004920_150 Hb_004920_150 Hb_004117_230--Hb_004920_150 Hb_004117_230--Hb_034507_030 Hb_004117_230--Hb_001014_180 Hb_004117_230--Hb_007281_010 Hb_004117_230--Hb_000462_040 Hb_000090_010--Hb_101705_040 Hb_000090_010--Hb_002311_020 Hb_028818_020 Hb_028818_020 Hb_000090_010--Hb_028818_020 Hb_002311_010 Hb_002311_010 Hb_007281_010--Hb_002311_010 Hb_038927_020 Hb_038927_020 Hb_007281_010--Hb_038927_020 Hb_007281_010--Hb_001014_180 Hb_007281_010--Hb_001712_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0170083 1.02054 0.377913 14.5541 0 0.0353747
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0388283 0 0 0.158955 18.3683

CAGE analysis