Hb_000090_010

Information

Type -
Description -
Location Contig90: 7316-7776
Sequence    

Annotation

kegg
ID vvi:100261496
description beta-Amyrin Synthase 2-like
nr
ID KDP25032.1
description hypothetical protein JCGZ_22567 [Jatropha curcas]
swissprot
ID A8C980
description Germanicol synthase OS=Rhizophora stylosa GN=M1 PE=1 SV=1
trembl
ID A0A067JMB3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22567 PE=4 SV=1
Gene Ontology
ID GO:0042300
description beta-amyrin synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61944: 6372-7950
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000090_010 0.0 - - hypothetical protein JCGZ_22567 [Jatropha curcas]
2 Hb_004994_230 0.041924788 transcription factor TF Family: LIM Pollen-specific protein SF3, putative [Ricinus communis]
3 Hb_101705_040 0.0555741439 - - cytochrome P450, putative [Ricinus communis]
4 Hb_034507_030 0.0594368604 - - PREDICTED: laccase-4-like [Jatropha curcas]
5 Hb_006483_020 0.0769912271 - - PREDICTED: PI-PLC X domain-containing protein At5g67130-like isoform X1 [Jatropha curcas]
6 Hb_002311_020 0.0841889355 - - PREDICTED: putative beta-D-xylosidase [Jatropha curcas]
7 Hb_028818_020 0.0879274858 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9-like [Jatropha curcas]
8 Hb_004117_230 0.0935642492 - - lipid transfer precursor protein [Hevea brasiliensis]
9 Hb_000805_060 0.1017350972 - - laccase, putative [Ricinus communis]
10 Hb_003906_080 0.1022254402 - - Peroxidase 66 precursor, putative [Ricinus communis]
11 Hb_001014_180 0.1030235554 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10 [Jatropha curcas]
12 Hb_006351_090 0.1043537971 - - UDP-glycosyltransferase 85A1 [Gossypium arboreum]
13 Hb_001123_300 0.1070875648 - - hypothetical protein POPTR_0003s16270g [Populus trichocarpa]
14 Hb_000155_230 0.1110199027 - - rac gtpase, putative [Ricinus communis]
15 Hb_000462_040 0.1125658265 - - ATSMC2, putative [Ricinus communis]
16 Hb_007281_010 0.1152955613 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
17 Hb_159229_030 0.1155246356 - - hypothetical protein CISIN_1g0034891mg, partial [Citrus sinensis]
18 Hb_091378_010 0.1156061056 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
19 Hb_008705_080 0.115615559 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
20 Hb_002457_010 0.1157743596 - - polyprotein [Oryza australiensis]

Gene co-expression network

sample Hb_000090_010 Hb_000090_010 Hb_004994_230 Hb_004994_230 Hb_000090_010--Hb_004994_230 Hb_101705_040 Hb_101705_040 Hb_000090_010--Hb_101705_040 Hb_034507_030 Hb_034507_030 Hb_000090_010--Hb_034507_030 Hb_006483_020 Hb_006483_020 Hb_000090_010--Hb_006483_020 Hb_002311_020 Hb_002311_020 Hb_000090_010--Hb_002311_020 Hb_028818_020 Hb_028818_020 Hb_000090_010--Hb_028818_020 Hb_004994_230--Hb_034507_030 Hb_004994_230--Hb_101705_040 Hb_004994_230--Hb_006483_020 Hb_004994_230--Hb_002311_020 Hb_000805_060 Hb_000805_060 Hb_004994_230--Hb_000805_060 Hb_101705_040--Hb_028818_020 Hb_000155_230 Hb_000155_230 Hb_101705_040--Hb_000155_230 Hb_101705_040--Hb_034507_030 Hb_001105_150 Hb_001105_150 Hb_101705_040--Hb_001105_150 Hb_034507_030--Hb_006483_020 Hb_001014_180 Hb_001014_180 Hb_034507_030--Hb_001014_180 Hb_000462_040 Hb_000462_040 Hb_034507_030--Hb_000462_040 Hb_007281_010 Hb_007281_010 Hb_034507_030--Hb_007281_010 Hb_006483_020--Hb_000462_040 Hb_004117_230 Hb_004117_230 Hb_006483_020--Hb_004117_230 Hb_006483_020--Hb_007281_010 Hb_003906_080 Hb_003906_080 Hb_002311_020--Hb_003906_080 Hb_002311_020--Hb_000805_060 Hb_006351_090 Hb_006351_090 Hb_002311_020--Hb_006351_090 Hb_002311_020--Hb_034507_030 Hb_028818_020--Hb_000155_230 Hb_028818_020--Hb_001105_150 Hb_001123_300 Hb_001123_300 Hb_028818_020--Hb_001123_300 Hb_028818_020--Hb_004994_230 Hb_028818_020--Hb_034507_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.00576 0.460988 31.2863 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.61342 46.494

CAGE analysis