Hb_002311_020

Information

Type -
Description -
Location Contig2311: 10729-15427
Sequence    

Annotation

kegg
ID rcu:RCOM_0999830
description Periplasmic beta-glucosidase precursor, putative (EC:3.2.1.21)
nr
ID XP_012084033.1
description PREDICTED: putative beta-D-xylosidase [Jatropha curcas]
swissprot
ID Q9FGY1
description Beta-D-xylosidase 1 OS=Arabidopsis thaliana GN=BXL1 PE=1 SV=1
trembl
ID A0A067JVH2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18967 PE=4 SV=1
Gene Ontology
ID GO:0009505
description beta-d-xylosidase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24282: 11015-13358 , PASA_asmbl_24283: 13359-13875 , PASA_asmbl_24284: 13876-15368
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002311_020 0.0 - - PREDICTED: putative beta-D-xylosidase [Jatropha curcas]
2 Hb_003906_080 0.0582181935 - - Peroxidase 66 precursor, putative [Ricinus communis]
3 Hb_004994_230 0.0657545641 transcription factor TF Family: LIM Pollen-specific protein SF3, putative [Ricinus communis]
4 Hb_000805_060 0.0684909566 - - laccase, putative [Ricinus communis]
5 Hb_006351_090 0.0715908658 - - UDP-glycosyltransferase 85A1 [Gossypium arboreum]
6 Hb_034507_030 0.0753105748 - - PREDICTED: laccase-4-like [Jatropha curcas]
7 Hb_000090_010 0.0841889355 - - hypothetical protein JCGZ_22567 [Jatropha curcas]
8 Hb_001014_180 0.088995624 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10 [Jatropha curcas]
9 Hb_160190_010 0.0918672163 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
10 Hb_002457_010 0.0919484798 - - polyprotein [Oryza australiensis]
11 Hb_091378_010 0.0920563973 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
12 Hb_159229_030 0.0921188716 - - hypothetical protein CISIN_1g0034891mg, partial [Citrus sinensis]
13 Hb_009423_020 0.092506422 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_006351_100 0.0935861851 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
15 Hb_001335_020 0.0941029064 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
16 Hb_010098_030 0.0952195869 - - conserved hypothetical protein [Ricinus communis]
17 Hb_112765_010 0.0958615251 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000307_020 0.0960194781 - - PREDICTED: uncharacterized protein LOC100255757 [Vitis vinifera]
19 Hb_003972_070 0.0977804775 - - PREDICTED: cytochrome P450 85A1-like [Citrus sinensis]
20 Hb_000917_040 0.0983338948 - - PREDICTED: uncharacterized protein LOC105639996 [Jatropha curcas]

Gene co-expression network

sample Hb_002311_020 Hb_002311_020 Hb_003906_080 Hb_003906_080 Hb_002311_020--Hb_003906_080 Hb_004994_230 Hb_004994_230 Hb_002311_020--Hb_004994_230 Hb_000805_060 Hb_000805_060 Hb_002311_020--Hb_000805_060 Hb_006351_090 Hb_006351_090 Hb_002311_020--Hb_006351_090 Hb_034507_030 Hb_034507_030 Hb_002311_020--Hb_034507_030 Hb_000090_010 Hb_000090_010 Hb_002311_020--Hb_000090_010 Hb_003906_080--Hb_006351_090 Hb_002170_030 Hb_002170_030 Hb_003906_080--Hb_002170_030 Hb_003906_080--Hb_004994_230 Hb_003906_080--Hb_000805_060 Hb_023342_010 Hb_023342_010 Hb_003906_080--Hb_023342_010 Hb_004994_230--Hb_034507_030 Hb_004994_230--Hb_000090_010 Hb_101705_040 Hb_101705_040 Hb_004994_230--Hb_101705_040 Hb_006483_020 Hb_006483_020 Hb_004994_230--Hb_006483_020 Hb_004994_230--Hb_000805_060 Hb_008705_080 Hb_008705_080 Hb_000805_060--Hb_008705_080 Hb_000805_060--Hb_034507_030 Hb_007281_010 Hb_007281_010 Hb_000805_060--Hb_007281_010 Hb_001014_180 Hb_001014_180 Hb_000805_060--Hb_001014_180 Hb_006351_090--Hb_002170_030 Hb_009158_040 Hb_009158_040 Hb_006351_090--Hb_009158_040 Hb_006351_090--Hb_008705_080 Hb_001053_120 Hb_001053_120 Hb_006351_090--Hb_001053_120 Hb_006351_090--Hb_023342_010 Hb_034507_030--Hb_006483_020 Hb_034507_030--Hb_001014_180 Hb_034507_030--Hb_000090_010 Hb_000462_040 Hb_000462_040 Hb_034507_030--Hb_000462_040 Hb_034507_030--Hb_007281_010 Hb_000090_010--Hb_101705_040 Hb_000090_010--Hb_006483_020 Hb_028818_020 Hb_028818_020 Hb_000090_010--Hb_028818_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00661803 0.310754 1.3964 46.0744 0.0380221 0.0245955
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0468548 61.2501

CAGE analysis