Hb_000805_060

Information

Type -
Description -
Location Contig805: 33401-36194
Sequence    

Annotation

kegg
ID rcu:RCOM_0734890
description laccase, putative (EC:1.10.3.3)
nr
ID XP_002520541.1
description laccase, putative [Ricinus communis]
swissprot
ID O81081
description Laccase-2 OS=Arabidopsis thaliana GN=LAC2 PE=2 SV=1
trembl
ID B9S3H2
description Laccase OS=Ricinus communis GN=RCOM_0734890 PE=3 SV=1
Gene Ontology
ID GO:0048046
description laccase 17

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58960: 33580-34318 , PASA_asmbl_58961: 35301-35886
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000805_060 0.0 - - laccase, putative [Ricinus communis]
2 Hb_008705_080 0.0611360519 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
3 Hb_002311_020 0.0684909566 - - PREDICTED: putative beta-D-xylosidase [Jatropha curcas]
4 Hb_034507_030 0.0695648252 - - PREDICTED: laccase-4-like [Jatropha curcas]
5 Hb_004994_230 0.0731327495 transcription factor TF Family: LIM Pollen-specific protein SF3, putative [Ricinus communis]
6 Hb_007281_010 0.0775923898 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
7 Hb_001014_180 0.0780198211 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10 [Jatropha curcas]
8 Hb_006351_090 0.0788295415 - - UDP-glycosyltransferase 85A1 [Gossypium arboreum]
9 Hb_002170_030 0.0825512809 - - PREDICTED: laccase-4-like [Jatropha curcas]
10 Hb_003906_080 0.0833975347 - - Peroxidase 66 precursor, putative [Ricinus communis]
11 Hb_026198_080 0.0847977503 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 [Populus euphratica]
12 Hb_001123_300 0.0850992343 - - hypothetical protein POPTR_0003s16270g [Populus trichocarpa]
13 Hb_000462_040 0.0877614882 - - ATSMC2, putative [Ricinus communis]
14 Hb_003972_070 0.0886868029 - - PREDICTED: cytochrome P450 85A1-like [Citrus sinensis]
15 Hb_006483_020 0.0903285809 - - PREDICTED: PI-PLC X domain-containing protein At5g67130-like isoform X1 [Jatropha curcas]
16 Hb_038927_020 0.0921968006 - - PREDICTED: rac-like GTP-binding protein RAC13 [Cucumis melo]
17 Hb_009158_040 0.0943658488 - - PREDICTED: auxin-induced protein 15A [Jatropha curcas]
18 Hb_002311_010 0.0999799626 - - PREDICTED: chitinase-like protein 2 [Jatropha curcas]
19 Hb_000090_010 0.1017350972 - - hypothetical protein JCGZ_22567 [Jatropha curcas]
20 Hb_008695_060 0.1033533353 - - unknown [Populus trichocarpa x Populus deltoides]

Gene co-expression network

sample Hb_000805_060 Hb_000805_060 Hb_008705_080 Hb_008705_080 Hb_000805_060--Hb_008705_080 Hb_002311_020 Hb_002311_020 Hb_000805_060--Hb_002311_020 Hb_034507_030 Hb_034507_030 Hb_000805_060--Hb_034507_030 Hb_004994_230 Hb_004994_230 Hb_000805_060--Hb_004994_230 Hb_007281_010 Hb_007281_010 Hb_000805_060--Hb_007281_010 Hb_001014_180 Hb_001014_180 Hb_000805_060--Hb_001014_180 Hb_002170_030 Hb_002170_030 Hb_008705_080--Hb_002170_030 Hb_026198_080 Hb_026198_080 Hb_008705_080--Hb_026198_080 Hb_001053_120 Hb_001053_120 Hb_008705_080--Hb_001053_120 Hb_009158_040 Hb_009158_040 Hb_008705_080--Hb_009158_040 Hb_006351_090 Hb_006351_090 Hb_008705_080--Hb_006351_090 Hb_003906_080 Hb_003906_080 Hb_002311_020--Hb_003906_080 Hb_002311_020--Hb_004994_230 Hb_002311_020--Hb_006351_090 Hb_002311_020--Hb_034507_030 Hb_000090_010 Hb_000090_010 Hb_002311_020--Hb_000090_010 Hb_034507_030--Hb_004994_230 Hb_006483_020 Hb_006483_020 Hb_034507_030--Hb_006483_020 Hb_034507_030--Hb_001014_180 Hb_034507_030--Hb_000090_010 Hb_000462_040 Hb_000462_040 Hb_034507_030--Hb_000462_040 Hb_034507_030--Hb_007281_010 Hb_004994_230--Hb_000090_010 Hb_101705_040 Hb_101705_040 Hb_004994_230--Hb_101705_040 Hb_004994_230--Hb_006483_020 Hb_002311_010 Hb_002311_010 Hb_007281_010--Hb_002311_010 Hb_038927_020 Hb_038927_020 Hb_007281_010--Hb_038927_020 Hb_007281_010--Hb_001014_180 Hb_007281_010--Hb_000462_040 Hb_001712_030 Hb_001712_030 Hb_007281_010--Hb_001712_030 Hb_003972_070 Hb_003972_070 Hb_001014_180--Hb_003972_070 Hb_004117_230 Hb_004117_230 Hb_001014_180--Hb_004117_230 Hb_001014_180--Hb_000462_040 Hb_001014_180--Hb_002311_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.05603 0.507373 0.926148 18.6559 0.157743 0.0178507
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0212151 0 0 0.0066378 24.1336

CAGE analysis