Hb_004994_230

Information

Type transcription factor
Description TF Family: LIM
Location Contig4994: 168950-170599
Sequence    

Annotation

kegg
ID rcu:RCOM_1614610
description Pollen-specific protein SF3, putative
nr
ID XP_002511828.1
description Pollen-specific protein SF3, putative [Ricinus communis]
swissprot
ID Q1ECF5
description LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana GN=PLIM2B PE=1 SV=1
trembl
ID B9RDN9
description Pollen-specific protein SF3, putative OS=Ricinus communis GN=RCOM_1614610 PE=4 SV=1
Gene Ontology
ID GO:0008270
description lim domain-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004994_230 0.0 transcription factor TF Family: LIM Pollen-specific protein SF3, putative [Ricinus communis]
2 Hb_034507_030 0.0312347668 - - PREDICTED: laccase-4-like [Jatropha curcas]
3 Hb_000090_010 0.041924788 - - hypothetical protein JCGZ_22567 [Jatropha curcas]
4 Hb_101705_040 0.0636675404 - - cytochrome P450, putative [Ricinus communis]
5 Hb_006483_020 0.0638393661 - - PREDICTED: PI-PLC X domain-containing protein At5g67130-like isoform X1 [Jatropha curcas]
6 Hb_002311_020 0.0657545641 - - PREDICTED: putative beta-D-xylosidase [Jatropha curcas]
7 Hb_000805_060 0.0731327495 - - laccase, putative [Ricinus communis]
8 Hb_028818_020 0.0756125109 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9-like [Jatropha curcas]
9 Hb_001014_180 0.0791406663 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10 [Jatropha curcas]
10 Hb_006351_090 0.0794774048 - - UDP-glycosyltransferase 85A1 [Gossypium arboreum]
11 Hb_003906_080 0.0804767268 - - Peroxidase 66 precursor, putative [Ricinus communis]
12 Hb_001123_300 0.0831070525 - - hypothetical protein POPTR_0003s16270g [Populus trichocarpa]
13 Hb_008705_080 0.0860640048 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
14 Hb_000462_040 0.0872418931 - - ATSMC2, putative [Ricinus communis]
15 Hb_004117_230 0.0888761337 - - lipid transfer precursor protein [Hevea brasiliensis]
16 Hb_007281_010 0.0911524599 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
17 Hb_002170_030 0.0966095776 - - PREDICTED: laccase-4-like [Jatropha curcas]
18 Hb_003972_070 0.0992256078 - - PREDICTED: cytochrome P450 85A1-like [Citrus sinensis]
19 Hb_001105_150 0.1045383361 - - GERMIN-LIKE protein 10 [Populus trichocarpa]
20 Hb_026198_080 0.1050643872 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 [Populus euphratica]

Gene co-expression network

sample Hb_004994_230 Hb_004994_230 Hb_034507_030 Hb_034507_030 Hb_004994_230--Hb_034507_030 Hb_000090_010 Hb_000090_010 Hb_004994_230--Hb_000090_010 Hb_101705_040 Hb_101705_040 Hb_004994_230--Hb_101705_040 Hb_006483_020 Hb_006483_020 Hb_004994_230--Hb_006483_020 Hb_002311_020 Hb_002311_020 Hb_004994_230--Hb_002311_020 Hb_000805_060 Hb_000805_060 Hb_004994_230--Hb_000805_060 Hb_034507_030--Hb_006483_020 Hb_001014_180 Hb_001014_180 Hb_034507_030--Hb_001014_180 Hb_034507_030--Hb_000090_010 Hb_000462_040 Hb_000462_040 Hb_034507_030--Hb_000462_040 Hb_007281_010 Hb_007281_010 Hb_034507_030--Hb_007281_010 Hb_000090_010--Hb_101705_040 Hb_000090_010--Hb_006483_020 Hb_000090_010--Hb_002311_020 Hb_028818_020 Hb_028818_020 Hb_000090_010--Hb_028818_020 Hb_101705_040--Hb_028818_020 Hb_000155_230 Hb_000155_230 Hb_101705_040--Hb_000155_230 Hb_101705_040--Hb_034507_030 Hb_001105_150 Hb_001105_150 Hb_101705_040--Hb_001105_150 Hb_006483_020--Hb_000462_040 Hb_004117_230 Hb_004117_230 Hb_006483_020--Hb_004117_230 Hb_006483_020--Hb_007281_010 Hb_003906_080 Hb_003906_080 Hb_002311_020--Hb_003906_080 Hb_002311_020--Hb_000805_060 Hb_006351_090 Hb_006351_090 Hb_002311_020--Hb_006351_090 Hb_002311_020--Hb_034507_030 Hb_008705_080 Hb_008705_080 Hb_000805_060--Hb_008705_080 Hb_000805_060--Hb_034507_030 Hb_000805_060--Hb_007281_010 Hb_000805_060--Hb_001014_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.100065 0.079024 2.75125 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0180944 3.91979

CAGE analysis