Hb_000155_230

Information

Type -
Description -
Location Contig155: 351735-353342
Sequence    

Annotation

kegg
ID rcu:RCOM_1012270
description rac gtpase, putative (EC:3.1.4.12)
nr
ID XP_002522514.1
description rac gtpase, putative [Ricinus communis]
swissprot
ID Q40220
description Rac-like GTP-binding protein RAC2 OS=Lotus japonicus GN=RAC2 PE=2 SV=1
trembl
ID B9S945
description Rac gtpase, putative OS=Ricinus communis GN=RCOM_1012270 PE=3 SV=1
Gene Ontology
ID GO:0005622
description rac-like gtp-binding protein rac13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000155_230 0.0 - - rac gtpase, putative [Ricinus communis]
2 Hb_001105_150 0.0397570978 - - GERMIN-LIKE protein 10 [Populus trichocarpa]
3 Hb_028818_020 0.0536764586 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9-like [Jatropha curcas]
4 Hb_140595_030 0.0659023931 - - -
5 Hb_001123_300 0.0809780219 - - hypothetical protein POPTR_0003s16270g [Populus trichocarpa]
6 Hb_101705_040 0.0840786855 - - cytochrome P450, putative [Ricinus communis]
7 Hb_140595_020 0.0863132577 - - PREDICTED: vegetative cell wall protein gp1-like [Solanum lycopersicum]
8 Hb_189208_080 0.0944903971 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 11-like isoform X1 [Jatropha curcas]
9 Hb_008695_060 0.0957097256 - - unknown [Populus trichocarpa x Populus deltoides]
10 Hb_003038_070 0.0965020067 - - syntaxin, putative [Ricinus communis]
11 Hb_001104_070 0.0974713553 - - hypothetical protein SORBIDRAFT_10g024640 [Sorghum bicolor]
12 Hb_000260_520 0.1003580785 - - receptor protein kinase, putative [Ricinus communis]
13 Hb_002675_220 0.1020992012 - - PREDICTED: probable pyridoxal biosynthesis protein PDX1.2 [Populus euphratica]
14 Hb_000920_340 0.1050329663 - - o-methyltransferase, putative [Ricinus communis]
15 Hb_004994_230 0.1055235369 transcription factor TF Family: LIM Pollen-specific protein SF3, putative [Ricinus communis]
16 Hb_002170_030 0.1081241334 - - PREDICTED: laccase-4-like [Jatropha curcas]
17 Hb_000090_010 0.1110199027 - - hypothetical protein JCGZ_22567 [Jatropha curcas]
18 Hb_003906_080 0.1115707241 - - Peroxidase 66 precursor, putative [Ricinus communis]
19 Hb_008705_080 0.1138389623 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
20 Hb_002929_040 0.1142134708 - - zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000155_230 Hb_000155_230 Hb_001105_150 Hb_001105_150 Hb_000155_230--Hb_001105_150 Hb_028818_020 Hb_028818_020 Hb_000155_230--Hb_028818_020 Hb_140595_030 Hb_140595_030 Hb_000155_230--Hb_140595_030 Hb_001123_300 Hb_001123_300 Hb_000155_230--Hb_001123_300 Hb_101705_040 Hb_101705_040 Hb_000155_230--Hb_101705_040 Hb_140595_020 Hb_140595_020 Hb_000155_230--Hb_140595_020 Hb_001105_150--Hb_028818_020 Hb_001105_150--Hb_140595_030 Hb_001105_150--Hb_001123_300 Hb_002675_220 Hb_002675_220 Hb_001105_150--Hb_002675_220 Hb_001104_070 Hb_001104_070 Hb_001105_150--Hb_001104_070 Hb_028818_020--Hb_001123_300 Hb_004994_230 Hb_004994_230 Hb_028818_020--Hb_004994_230 Hb_028818_020--Hb_101705_040 Hb_034507_030 Hb_034507_030 Hb_028818_020--Hb_034507_030 Hb_140595_030--Hb_140595_020 Hb_140595_030--Hb_001104_070 Hb_000920_340 Hb_000920_340 Hb_140595_030--Hb_000920_340 Hb_000260_520 Hb_000260_520 Hb_140595_030--Hb_000260_520 Hb_008695_060 Hb_008695_060 Hb_001123_300--Hb_008695_060 Hb_000462_040 Hb_000462_040 Hb_001123_300--Hb_000462_040 Hb_008705_080 Hb_008705_080 Hb_001123_300--Hb_008705_080 Hb_001123_300--Hb_034507_030 Hb_000090_010 Hb_000090_010 Hb_101705_040--Hb_000090_010 Hb_101705_040--Hb_004994_230 Hb_101705_040--Hb_034507_030 Hb_101705_040--Hb_001105_150 Hb_001186_040 Hb_001186_040 Hb_140595_020--Hb_001186_040 Hb_140595_020--Hb_000260_520 Hb_140595_020--Hb_001104_070 Hb_140595_020--Hb_001105_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.37546 2.67703 32.4528 0.0946085 0.0611329
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.03438 0 0.717019 70.966

CAGE analysis