Hb_002675_220

Information

Type -
Description -
Location Contig2675: 207055-211878
Sequence    

Annotation

kegg
ID pop:POPTR_0001s18240g
description POPTRDRAFT_548840; pyridoxin biosynthesis PDX1-like protein 2
nr
ID XP_011007588.1
description PREDICTED: probable pyridoxal biosynthesis protein PDX1.2 [Populus euphratica]
swissprot
ID Q9ZNR6
description Pyridoxal 5'-phosphate synthase-like subunit PDX1.2 OS=Arabidopsis thaliana GN=PDX12 PE=1 SV=1
trembl
ID B9GFP4
description Pyridoxin biosynthesis PDX1-like protein 2 OS=Populus trichocarpa GN=POPTR_0001s18240g PE=4 SV=2
Gene Ontology
ID GO:0003824
description probable pyridoxal biosynthesis protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002675_220 0.0 - - PREDICTED: probable pyridoxal biosynthesis protein PDX1.2 [Populus euphratica]
2 Hb_002250_040 0.0378503095 - - PREDICTED: transcription repressor OFP17 [Jatropha curcas]
3 Hb_001104_070 0.0469735554 - - hypothetical protein SORBIDRAFT_10g024640 [Sorghum bicolor]
4 Hb_018487_040 0.0479543841 - - PREDICTED: 3-ketoacyl-CoA synthase 6 [Jatropha curcas]
5 Hb_189208_080 0.0755142637 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 11-like isoform X1 [Jatropha curcas]
6 Hb_080048_030 0.0761374254 desease resistance Gene Name: NB-ARC Leucine-rich repeat containing protein [Theobroma cacao]
7 Hb_005483_040 0.0794878086 - - PREDICTED: mechanosensitive ion channel protein 10-like [Jatropha curcas]
8 Hb_034299_010 0.08010126 - - F-box and wd40 domain protein, putative [Ricinus communis]
9 Hb_001105_150 0.0840944607 - - GERMIN-LIKE protein 10 [Populus trichocarpa]
10 Hb_169492_010 0.0860473198 - - PREDICTED: expansin-like B1 [Jatropha curcas]
11 Hb_005062_100 0.0865632893 - - Ferredoxin-2, chloroplast precursor, putative [Ricinus communis]
12 Hb_000260_520 0.0883315134 - - receptor protein kinase, putative [Ricinus communis]
13 Hb_004329_030 0.0899344752 - - hypothetical protein JCGZ_17335 [Jatropha curcas]
14 Hb_002960_180 0.0913078537 - - PREDICTED: GDSL esterase/lipase EXL3-like [Jatropha curcas]
15 Hb_099263_010 0.0922368327 - - hypothetical protein AALP_AAs50029U000400 [Arabis alpina]
16 Hb_000540_080 0.092705928 - - PREDICTED: laccase-17 [Jatropha curcas]
17 Hb_001051_020 0.0937445159 - - hypothetical protein L484_008044 [Morus notabilis]
18 Hb_002081_140 0.0938180534 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000538_110 0.0939911925 - - sucrose synthase 1 [Hevea brasiliensis]
20 Hb_011214_080 0.0943272582 - - sucrose synthase 1 [Hevea brasiliensis]

Gene co-expression network

sample Hb_002675_220 Hb_002675_220 Hb_002250_040 Hb_002250_040 Hb_002675_220--Hb_002250_040 Hb_001104_070 Hb_001104_070 Hb_002675_220--Hb_001104_070 Hb_018487_040 Hb_018487_040 Hb_002675_220--Hb_018487_040 Hb_189208_080 Hb_189208_080 Hb_002675_220--Hb_189208_080 Hb_080048_030 Hb_080048_030 Hb_002675_220--Hb_080048_030 Hb_005483_040 Hb_005483_040 Hb_002675_220--Hb_005483_040 Hb_002250_040--Hb_018487_040 Hb_002250_040--Hb_005483_040 Hb_000540_080 Hb_000540_080 Hb_002250_040--Hb_000540_080 Hb_002250_040--Hb_001104_070 Hb_005062_100 Hb_005062_100 Hb_002250_040--Hb_005062_100 Hb_001104_070--Hb_080048_030 Hb_001104_070--Hb_018487_040 Hb_001104_070--Hb_189208_080 Hb_140595_030 Hb_140595_030 Hb_001104_070--Hb_140595_030 Hb_018487_040--Hb_005483_040 Hb_002329_050 Hb_002329_050 Hb_018487_040--Hb_002329_050 Hb_018487_040--Hb_080048_030 Hb_000920_340 Hb_000920_340 Hb_189208_080--Hb_000920_340 Hb_189208_080--Hb_140595_030 Hb_011214_080 Hb_011214_080 Hb_189208_080--Hb_011214_080 Hb_000260_520 Hb_000260_520 Hb_189208_080--Hb_000260_520 Hb_169492_010 Hb_169492_010 Hb_080048_030--Hb_169492_010 Hb_005675_030 Hb_005675_030 Hb_080048_030--Hb_005675_030 Hb_080048_030--Hb_189208_080 Hb_005483_040--Hb_002329_050 Hb_000883_080 Hb_000883_080 Hb_005483_040--Hb_000883_080 Hb_006718_030 Hb_006718_030 Hb_005483_040--Hb_006718_030 Hb_011362_010 Hb_011362_010 Hb_005483_040--Hb_011362_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0199909 0.109788 0.427546 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00862801 1.18252

CAGE analysis