Hb_169492_010

Information

Type -
Description -
Location Contig169492: 4647-11455
Sequence    

Annotation

kegg
ID rcu:RCOM_0519640
description Major pollen allergen Ory s 1 precursor, putative
nr
ID XP_012075037.1
description PREDICTED: expansin-like B1 [Jatropha curcas]
swissprot
ID Q850K7
description Expansin-like B1 OS=Oryza sativa subsp. japonica GN=EXLB1 PE=2 SV=2
trembl
ID A0A067LC12
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11850 PE=3 SV=1
Gene Ontology
ID GO:0005576
description expansin-like b1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15756: 4694-4948 , PASA_asmbl_15757: 4982-6180 , PASA_asmbl_15759: 10925-11113 , PASA_asmbl_15760: 11254-11527
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_169492_010 0.0 - - PREDICTED: expansin-like B1 [Jatropha curcas]
2 Hb_080048_030 0.0668485624 desease resistance Gene Name: NB-ARC Leucine-rich repeat containing protein [Theobroma cacao]
3 Hb_018202_040 0.0696304886 - - PREDICTED: phosphoenolpyruvate/phosphate translocator 2, chloroplastic-like [Jatropha curcas]
4 Hb_005675_030 0.0717553645 - - PREDICTED: 3-ketoacyl-CoA synthase 6 [Jatropha curcas]
5 Hb_018487_040 0.073365104 - - PREDICTED: 3-ketoacyl-CoA synthase 6 [Jatropha curcas]
6 Hb_011537_130 0.0755936668 - - unnamed protein product [Vitis vinifera]
7 Hb_001951_050 0.0811660833 - - chlorophyll A/B binding protein, putative [Ricinus communis]
8 Hb_001104_070 0.0826630957 - - hypothetical protein SORBIDRAFT_10g024640 [Sorghum bicolor]
9 Hb_000815_120 0.0853717566 - - calcium ion binding protein, putative [Ricinus communis]
10 Hb_002188_150 0.0857251906 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002675_220 0.0860473198 - - PREDICTED: probable pyridoxal biosynthesis protein PDX1.2 [Populus euphratica]
12 Hb_001080_290 0.0884330216 - - PSI reaction center subunit II [Citrus sinensis]
13 Hb_000883_080 0.0922099759 - - ankyrin repeat-containing protein, putative [Ricinus communis]
14 Hb_010021_040 0.0929253201 - - PREDICTED: uncharacterized protein LOC105630811 [Jatropha curcas]
15 Hb_005483_040 0.0942978016 - - PREDICTED: mechanosensitive ion channel protein 10-like [Jatropha curcas]
16 Hb_001140_110 0.095216767 - - hypothetical protein JCGZ_26123 [Jatropha curcas]
17 Hb_007534_080 0.0952450499 - - d-3-phosphoglycerate dehydrogenase, putative [Ricinus communis]
18 Hb_042123_010 0.095384807 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Populus euphratica]
19 Hb_002250_040 0.0960902961 - - PREDICTED: transcription repressor OFP17 [Jatropha curcas]
20 Hb_002413_050 0.0967284541 - - hypothetical protein POPTR_0018s06150g [Populus trichocarpa]

Gene co-expression network

sample Hb_169492_010 Hb_169492_010 Hb_080048_030 Hb_080048_030 Hb_169492_010--Hb_080048_030 Hb_018202_040 Hb_018202_040 Hb_169492_010--Hb_018202_040 Hb_005675_030 Hb_005675_030 Hb_169492_010--Hb_005675_030 Hb_018487_040 Hb_018487_040 Hb_169492_010--Hb_018487_040 Hb_011537_130 Hb_011537_130 Hb_169492_010--Hb_011537_130 Hb_001951_050 Hb_001951_050 Hb_169492_010--Hb_001951_050 Hb_001104_070 Hb_001104_070 Hb_080048_030--Hb_001104_070 Hb_080048_030--Hb_018487_040 Hb_080048_030--Hb_005675_030 Hb_002675_220 Hb_002675_220 Hb_080048_030--Hb_002675_220 Hb_189208_080 Hb_189208_080 Hb_080048_030--Hb_189208_080 Hb_018202_040--Hb_011537_130 Hb_018202_040--Hb_005675_030 Hb_002413_050 Hb_002413_050 Hb_018202_040--Hb_002413_050 Hb_010021_040 Hb_010021_040 Hb_018202_040--Hb_010021_040 Hb_000883_080 Hb_000883_080 Hb_018202_040--Hb_000883_080 Hb_005675_030--Hb_011537_130 Hb_001488_160 Hb_001488_160 Hb_005675_030--Hb_001488_160 Hb_005675_030--Hb_018487_040 Hb_018487_040--Hb_002675_220 Hb_002250_040 Hb_002250_040 Hb_018487_040--Hb_002250_040 Hb_018487_040--Hb_001104_070 Hb_005483_040 Hb_005483_040 Hb_018487_040--Hb_005483_040 Hb_002329_050 Hb_002329_050 Hb_018487_040--Hb_002329_050 Hb_011537_130--Hb_002413_050 Hb_002534_090 Hb_002534_090 Hb_011537_130--Hb_002534_090 Hb_002044_070 Hb_002044_070 Hb_011537_130--Hb_002044_070 Hb_001140_110 Hb_001140_110 Hb_001951_050--Hb_001140_110 Hb_001080_290 Hb_001080_290 Hb_001951_050--Hb_001080_290 Hb_001097_110 Hb_001097_110 Hb_001951_050--Hb_001097_110 Hb_004143_080 Hb_004143_080 Hb_001951_050--Hb_004143_080 Hb_000815_120 Hb_000815_120 Hb_001951_050--Hb_000815_120 Hb_042123_010 Hb_042123_010 Hb_001951_050--Hb_042123_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0762255 0.416775 0.833773 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0469565 3.5511

CAGE analysis