Hb_002534_090

Information

Type -
Description -
Location Contig2534: 66868-68823
Sequence    

Annotation

kegg
ID pop:POPTR_0012s07060g
description POPTRDRAFT_569972; geranylgeranyl reductase family protein
nr
ID BAH10639.1
description geranylgeranyl reductase [Hevea brasiliensis]
swissprot
ID Q9ZS34
description Geranylgeranyl diphosphate reductase, chloroplastic OS=Nicotiana tabacum GN=CHLP PE=2 SV=1
trembl
ID B7X936
description Geranylgeranyl reductase OS=Hevea brasiliensis GN=ggdr PE=2 SV=1
Gene Ontology
ID GO:0016628
description geranylgeranyl diphosphate chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26493: 66835-68741
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002534_090 0.0 - - geranylgeranyl reductase [Hevea brasiliensis]
2 Hb_002289_070 0.0419444262 - - PREDICTED: magnesium-chelatase subunit ChlH, chloroplastic [Jatropha curcas]
3 Hb_002413_050 0.052363728 - - hypothetical protein POPTR_0018s06150g [Populus trichocarpa]
4 Hb_001517_060 0.0676419225 - - phosphoribulose kinase, putative [Ricinus communis]
5 Hb_011537_130 0.0716794706 - - unnamed protein product [Vitis vinifera]
6 Hb_000009_470 0.0771165464 - - Oxygen-evolving enhancer protein 1, chloroplast precursor, putative [Ricinus communis]
7 Hb_011381_120 0.0776155944 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2-like [Jatropha curcas]
8 Hb_000307_100 0.0792607259 - - Plastocyanin A, chloroplast precursor, putative [Ricinus communis]
9 Hb_014361_120 0.0805290733 - - PREDICTED: BTB/POZ domain-containing protein At5g67385 [Jatropha curcas]
10 Hb_029622_060 0.084700124 - - PREDICTED: putative lipase ROG1 isoform X1 [Jatropha curcas]
11 Hb_123689_010 0.0847381511 - - PREDICTED: uncharacterized protein At1g18480 [Jatropha curcas]
12 Hb_001579_050 0.0849701653 - - alcohol dehydrogenase, putative [Ricinus communis]
13 Hb_002701_250 0.088245033 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
14 Hb_009093_020 0.0885972986 - - PREDICTED: uncharacterized protein LOC105642100 [Jatropha curcas]
15 Hb_001310_020 0.0889758586 - - PREDICTED: cyclin-D5-1-like isoform X2 [Jatropha curcas]
16 Hb_002044_070 0.0892125284 - - Chlorophyll a-b binding protein 3, chloroplastic [Theobroma cacao]
17 Hb_001289_050 0.0898970349 - - hypothetical protein Poptr_cp075 [Populus trichocarpa]
18 Hb_000482_180 0.0906366157 - - PREDICTED: glycine dehydrogenase (decarboxylating), mitochondrial [Jatropha curcas]
19 Hb_002818_130 0.0936637802 - - cytochrome P450, putative [Ricinus communis]
20 Hb_000352_230 0.0946657301 - - PREDICTED: glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002534_090 Hb_002534_090 Hb_002289_070 Hb_002289_070 Hb_002534_090--Hb_002289_070 Hb_002413_050 Hb_002413_050 Hb_002534_090--Hb_002413_050 Hb_001517_060 Hb_001517_060 Hb_002534_090--Hb_001517_060 Hb_011537_130 Hb_011537_130 Hb_002534_090--Hb_011537_130 Hb_000009_470 Hb_000009_470 Hb_002534_090--Hb_000009_470 Hb_011381_120 Hb_011381_120 Hb_002534_090--Hb_011381_120 Hb_014361_120 Hb_014361_120 Hb_002289_070--Hb_014361_120 Hb_002289_070--Hb_001517_060 Hb_002289_070--Hb_011381_120 Hb_002701_250 Hb_002701_250 Hb_002289_070--Hb_002701_250 Hb_009093_020 Hb_009093_020 Hb_002289_070--Hb_009093_020 Hb_002413_050--Hb_011537_130 Hb_002044_070 Hb_002044_070 Hb_002413_050--Hb_002044_070 Hb_029622_060 Hb_029622_060 Hb_002413_050--Hb_029622_060 Hb_018202_040 Hb_018202_040 Hb_002413_050--Hb_018202_040 Hb_005675_030 Hb_005675_030 Hb_002413_050--Hb_005675_030 Hb_001517_060--Hb_009093_020 Hb_001579_050 Hb_001579_050 Hb_001517_060--Hb_001579_050 Hb_000029_390 Hb_000029_390 Hb_001517_060--Hb_000029_390 Hb_001517_060--Hb_000009_470 Hb_011537_130--Hb_005675_030 Hb_011537_130--Hb_018202_040 Hb_169492_010 Hb_169492_010 Hb_011537_130--Hb_169492_010 Hb_011537_130--Hb_002044_070 Hb_011344_030 Hb_011344_030 Hb_000009_470--Hb_011344_030 Hb_004631_020 Hb_004631_020 Hb_000009_470--Hb_004631_020 Hb_007044_020 Hb_007044_020 Hb_000009_470--Hb_007044_020 Hb_004712_230 Hb_004712_230 Hb_000009_470--Hb_004712_230 Hb_011381_120--Hb_009093_020 Hb_002818_130 Hb_002818_130 Hb_011381_120--Hb_002818_130 Hb_000841_040 Hb_000841_040 Hb_011381_120--Hb_000841_040 Hb_000111_460 Hb_000111_460 Hb_011381_120--Hb_000111_460 Hb_001310_020 Hb_001310_020 Hb_011381_120--Hb_001310_020 Hb_003090_050 Hb_003090_050 Hb_011381_120--Hb_003090_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.14762 51.8402 298.202 225.964 0.429935 0.649559
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.517257 3.66282 0.733384 16.0885 1254.42

CAGE analysis