Hb_005675_030

Information

Type -
Description -
Location Contig5675: 14313-15803
Sequence    

Annotation

kegg
ID pop:POPTR_0010s13510g
description POPTRDRAFT_566626; ECERIFERUM 6 family protein
nr
ID XP_012082087.1
description PREDICTED: 3-ketoacyl-CoA synthase 6 [Jatropha curcas]
swissprot
ID Q9XF43
description 3-ketoacyl-CoA synthase 6 OS=Arabidopsis thaliana GN=CUT1 PE=1 SV=1
trembl
ID A0A067K2Y2
description 3-ketoacyl-CoA synthase OS=Jatropha curcas GN=JCGZ_18324 PE=3 SV=1
Gene Ontology
ID GO:0016020
description 3-ketoacyl- synthase 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005675_030 0.0 - - PREDICTED: 3-ketoacyl-CoA synthase 6 [Jatropha curcas]
2 Hb_011537_130 0.0333473852 - - unnamed protein product [Vitis vinifera]
3 Hb_001488_160 0.0615118069 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
4 Hb_018202_040 0.0640352055 - - PREDICTED: phosphoenolpyruvate/phosphate translocator 2, chloroplastic-like [Jatropha curcas]
5 Hb_080048_030 0.0705436921 desease resistance Gene Name: NB-ARC Leucine-rich repeat containing protein [Theobroma cacao]
6 Hb_018487_040 0.0713071266 - - PREDICTED: 3-ketoacyl-CoA synthase 6 [Jatropha curcas]
7 Hb_169492_010 0.0717553645 - - PREDICTED: expansin-like B1 [Jatropha curcas]
8 Hb_001699_110 0.077697286 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
9 Hb_002413_050 0.0812272992 - - hypothetical protein POPTR_0018s06150g [Populus trichocarpa]
10 Hb_002329_050 0.082943658 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005483_040 0.0855784192 - - PREDICTED: mechanosensitive ion channel protein 10-like [Jatropha curcas]
12 Hb_002044_070 0.0857499643 - - Chlorophyll a-b binding protein 3, chloroplastic [Theobroma cacao]
13 Hb_006573_240 0.0880310842 - - PREDICTED: anthocyanidin 5,3-O-glucosyltransferase-like [Jatropha curcas]
14 Hb_000883_080 0.0918634064 - - ankyrin repeat-containing protein, putative [Ricinus communis]
15 Hb_000928_260 0.0930182023 - - hypothetical protein POPTR_0019s06080g [Populus trichocarpa]
16 Hb_001104_070 0.094396433 - - hypothetical protein SORBIDRAFT_10g024640 [Sorghum bicolor]
17 Hb_006291_050 0.0944521133 - - PREDICTED: polyribonucleotide nucleotidyltransferase 2, mitochondrial isoform X1 [Jatropha curcas]
18 Hb_048755_030 0.0981547787 - - Periplasmic beta-glucosidase precursor, putative [Ricinus communis]
19 Hb_002534_090 0.1007770242 - - geranylgeranyl reductase [Hevea brasiliensis]
20 Hb_003787_030 0.1023359522 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005675_030 Hb_005675_030 Hb_011537_130 Hb_011537_130 Hb_005675_030--Hb_011537_130 Hb_001488_160 Hb_001488_160 Hb_005675_030--Hb_001488_160 Hb_018202_040 Hb_018202_040 Hb_005675_030--Hb_018202_040 Hb_080048_030 Hb_080048_030 Hb_005675_030--Hb_080048_030 Hb_018487_040 Hb_018487_040 Hb_005675_030--Hb_018487_040 Hb_169492_010 Hb_169492_010 Hb_005675_030--Hb_169492_010 Hb_011537_130--Hb_018202_040 Hb_002413_050 Hb_002413_050 Hb_011537_130--Hb_002413_050 Hb_002534_090 Hb_002534_090 Hb_011537_130--Hb_002534_090 Hb_011537_130--Hb_169492_010 Hb_002044_070 Hb_002044_070 Hb_011537_130--Hb_002044_070 Hb_001699_110 Hb_001699_110 Hb_001488_160--Hb_001699_110 Hb_001488_160--Hb_018487_040 Hb_001488_160--Hb_011537_130 Hb_001488_160--Hb_080048_030 Hb_000739_280 Hb_000739_280 Hb_001488_160--Hb_000739_280 Hb_018202_040--Hb_169492_010 Hb_018202_040--Hb_002413_050 Hb_010021_040 Hb_010021_040 Hb_018202_040--Hb_010021_040 Hb_000883_080 Hb_000883_080 Hb_018202_040--Hb_000883_080 Hb_001104_070 Hb_001104_070 Hb_080048_030--Hb_001104_070 Hb_080048_030--Hb_018487_040 Hb_080048_030--Hb_169492_010 Hb_002675_220 Hb_002675_220 Hb_080048_030--Hb_002675_220 Hb_189208_080 Hb_189208_080 Hb_080048_030--Hb_189208_080 Hb_018487_040--Hb_002675_220 Hb_002250_040 Hb_002250_040 Hb_018487_040--Hb_002250_040 Hb_018487_040--Hb_001104_070 Hb_005483_040 Hb_005483_040 Hb_018487_040--Hb_005483_040 Hb_002329_050 Hb_002329_050 Hb_018487_040--Hb_002329_050 Hb_169492_010--Hb_018487_040 Hb_001951_050 Hb_001951_050 Hb_169492_010--Hb_001951_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 10.6245 40.2425 66.988 0.0129266 0.0553775
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0314462 0 0 3.62444 229.947

CAGE analysis