Hb_002044_070

Information

Type -
Description -
Location Contig2044: 88883-90282
Sequence    

Annotation

kegg
ID tcc:TCM_002524
description Chlorophyll a-b binding protein 3, chloroplastic
nr
ID XP_007049480.1
description Chlorophyll a-b binding protein 3, chloroplastic [Theobroma cacao]
swissprot
ID P27522
description Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1
trembl
ID A0A061DMJ4
description Chlorophyll a-b binding protein 3, chloroplastic OS=Theobroma cacao GN=TCM_002524 PE=4 SV=1
Gene Ontology
ID GO:0009522
description chlorophyll a-b binding protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21003: 88990-90265
cDNA
(Sanger)
(ID:Location)		 003_G13.ab1: 89264-90265 , 004_E19.ab1: 89278-90265 , 007_A07.ab1: 89258-90254 , 025_N07.ab1: 89295-90265 , 028_O24.ab1: 89286-90265 , 032_B22.ab1: 89336-90265 , 035_K08.ab1: 89271-90265 , 042_C08.ab1: 89328-90254 , 042_G20.ab1: 89335-90265 , 042_K02.ab1: 89311-90265 , 045_E04.ab1: 89237-90265 , 049_A24.ab1: 89305-90264 , 049_D24.ab1: 89388-90265 , 049_J13.ab1: 89778-90233

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002044_070 0.0 - - Chlorophyll a-b binding protein 3, chloroplastic [Theobroma cacao]
2 Hb_002413_050 0.061512662 - - hypothetical protein POPTR_0018s06150g [Populus trichocarpa]
3 Hb_011537_130 0.076419891 - - unnamed protein product [Vitis vinifera]
4 Hb_029622_060 0.0808232939 - - PREDICTED: putative lipase ROG1 isoform X1 [Jatropha curcas]
5 Hb_005675_030 0.0857499643 - - PREDICTED: 3-ketoacyl-CoA synthase 6 [Jatropha curcas]
6 Hb_002534_090 0.0892125284 - - geranylgeranyl reductase [Hevea brasiliensis]
7 Hb_007595_020 0.0906567847 - - maturase K [Hevea brasiliensis]
8 Hb_002338_040 0.0931559574 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003787_030 0.0944179423 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000928_260 0.0952604522 - - hypothetical protein POPTR_0019s06080g [Populus trichocarpa]
11 Hb_018202_040 0.0957048547 - - PREDICTED: phosphoenolpyruvate/phosphate translocator 2, chloroplastic-like [Jatropha curcas]
12 Hb_006573_240 0.0971744852 - - PREDICTED: anthocyanidin 5,3-O-glucosyltransferase-like [Jatropha curcas]
13 Hb_005483_040 0.1007064356 - - PREDICTED: mechanosensitive ion channel protein 10-like [Jatropha curcas]
14 Hb_002301_070 0.1024355941 - - PREDICTED: triose phosphate/phosphate translocator TPT, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_000307_100 0.103594148 - - Plastocyanin A, chloroplast precursor, putative [Ricinus communis]
16 Hb_002042_210 0.1055934792 - - PREDICTED: UPF0603 protein At1g54780, chloroplastic [Jatropha curcas]
17 Hb_004128_170 0.1060642748 - - hypothetical protein POPTR_0016s08350g [Populus trichocarpa]
18 Hb_003033_020 0.1063319168 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9-like [Jatropha curcas]
19 Hb_012760_120 0.1075608321 - - PREDICTED: peroxidase 64-like [Jatropha curcas]
20 Hb_002329_050 0.1082356967 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002044_070 Hb_002044_070 Hb_002413_050 Hb_002413_050 Hb_002044_070--Hb_002413_050 Hb_011537_130 Hb_011537_130 Hb_002044_070--Hb_011537_130 Hb_029622_060 Hb_029622_060 Hb_002044_070--Hb_029622_060 Hb_005675_030 Hb_005675_030 Hb_002044_070--Hb_005675_030 Hb_002534_090 Hb_002534_090 Hb_002044_070--Hb_002534_090 Hb_007595_020 Hb_007595_020 Hb_002044_070--Hb_007595_020 Hb_002413_050--Hb_002534_090 Hb_002413_050--Hb_011537_130 Hb_002413_050--Hb_029622_060 Hb_018202_040 Hb_018202_040 Hb_002413_050--Hb_018202_040 Hb_002413_050--Hb_005675_030 Hb_011537_130--Hb_005675_030 Hb_011537_130--Hb_018202_040 Hb_011537_130--Hb_002534_090 Hb_169492_010 Hb_169492_010 Hb_011537_130--Hb_169492_010 Hb_123689_010 Hb_123689_010 Hb_029622_060--Hb_123689_010 Hb_003787_030 Hb_003787_030 Hb_029622_060--Hb_003787_030 Hb_010697_020 Hb_010697_020 Hb_029622_060--Hb_010697_020 Hb_002301_070 Hb_002301_070 Hb_029622_060--Hb_002301_070 Hb_000815_120 Hb_000815_120 Hb_029622_060--Hb_000815_120 Hb_001488_160 Hb_001488_160 Hb_005675_030--Hb_001488_160 Hb_005675_030--Hb_018202_040 Hb_080048_030 Hb_080048_030 Hb_005675_030--Hb_080048_030 Hb_018487_040 Hb_018487_040 Hb_005675_030--Hb_018487_040 Hb_005675_030--Hb_169492_010 Hb_002289_070 Hb_002289_070 Hb_002534_090--Hb_002289_070 Hb_001517_060 Hb_001517_060 Hb_002534_090--Hb_001517_060 Hb_000009_470 Hb_000009_470 Hb_002534_090--Hb_000009_470 Hb_011381_120 Hb_011381_120 Hb_002534_090--Hb_011381_120 Hb_068804_110 Hb_068804_110 Hb_007595_020--Hb_068804_110 Hb_000367_220 Hb_000367_220 Hb_007595_020--Hb_000367_220 Hb_005228_060 Hb_005228_060 Hb_007595_020--Hb_005228_060 Hb_007595_020--Hb_000009_470 Hb_007595_020--Hb_029622_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.94513 84.2584 528.919 672.6 15.4823 15.5208
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.49924 3.24823 5.16522 29.7581 2578.32

CAGE analysis