Hb_011537_130

Information

Type -
Description -
Location Contig11537: 133758-144785
Sequence    

Annotation

kegg
ID egr:104421567
description beta-glucosidase 24-like
nr
ID CBI24830.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q7XKV4
description Beta-glucosidase 12 OS=Oryza sativa subsp. japonica GN=BGLU12 PE=2 SV=2
trembl
ID F6HB85
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0064g01580 PE=3 SV=1
Gene Ontology
ID GO:0004553
description beta-glucosidase 12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04664: 133618-137592 , PASA_asmbl_04665: 133906-137525 , PASA_asmbl_04666: 142469-143172 , PASA_asmbl_04667: 144307-144836 , PASA_asmbl_04668: 143571-144836
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011537_130 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_005675_030 0.0333473852 - - PREDICTED: 3-ketoacyl-CoA synthase 6 [Jatropha curcas]
3 Hb_018202_040 0.0568467712 - - PREDICTED: phosphoenolpyruvate/phosphate translocator 2, chloroplastic-like [Jatropha curcas]
4 Hb_002413_050 0.058649457 - - hypothetical protein POPTR_0018s06150g [Populus trichocarpa]
5 Hb_002534_090 0.0716794706 - - geranylgeranyl reductase [Hevea brasiliensis]
6 Hb_169492_010 0.0755936668 - - PREDICTED: expansin-like B1 [Jatropha curcas]
7 Hb_002044_070 0.076419891 - - Chlorophyll a-b binding protein 3, chloroplastic [Theobroma cacao]
8 Hb_001488_160 0.0824568884 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
9 Hb_006573_240 0.0857525764 - - PREDICTED: anthocyanidin 5,3-O-glucosyltransferase-like [Jatropha curcas]
10 Hb_080048_030 0.0886655417 desease resistance Gene Name: NB-ARC Leucine-rich repeat containing protein [Theobroma cacao]
11 Hb_000928_260 0.0886788665 - - hypothetical protein POPTR_0019s06080g [Populus trichocarpa]
12 Hb_002289_070 0.090216277 - - PREDICTED: magnesium-chelatase subunit ChlH, chloroplastic [Jatropha curcas]
13 Hb_048755_030 0.0906794003 - - Periplasmic beta-glucosidase precursor, putative [Ricinus communis]
14 Hb_018487_040 0.0925211117 - - PREDICTED: 3-ketoacyl-CoA synthase 6 [Jatropha curcas]
15 Hb_001699_110 0.0944420252 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
16 Hb_000307_100 0.0946854432 - - Plastocyanin A, chloroplast precursor, putative [Ricinus communis]
17 Hb_003787_030 0.0965508677 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000482_180 0.0969704757 - - PREDICTED: glycine dehydrogenase (decarboxylating), mitochondrial [Jatropha curcas]
19 Hb_002329_050 0.0969967487 - - conserved hypothetical protein [Ricinus communis]
20 Hb_006291_050 0.0974932482 - - PREDICTED: polyribonucleotide nucleotidyltransferase 2, mitochondrial isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_011537_130 Hb_011537_130 Hb_005675_030 Hb_005675_030 Hb_011537_130--Hb_005675_030 Hb_018202_040 Hb_018202_040 Hb_011537_130--Hb_018202_040 Hb_002413_050 Hb_002413_050 Hb_011537_130--Hb_002413_050 Hb_002534_090 Hb_002534_090 Hb_011537_130--Hb_002534_090 Hb_169492_010 Hb_169492_010 Hb_011537_130--Hb_169492_010 Hb_002044_070 Hb_002044_070 Hb_011537_130--Hb_002044_070 Hb_001488_160 Hb_001488_160 Hb_005675_030--Hb_001488_160 Hb_005675_030--Hb_018202_040 Hb_080048_030 Hb_080048_030 Hb_005675_030--Hb_080048_030 Hb_018487_040 Hb_018487_040 Hb_005675_030--Hb_018487_040 Hb_005675_030--Hb_169492_010 Hb_018202_040--Hb_169492_010 Hb_018202_040--Hb_002413_050 Hb_010021_040 Hb_010021_040 Hb_018202_040--Hb_010021_040 Hb_000883_080 Hb_000883_080 Hb_018202_040--Hb_000883_080 Hb_002413_050--Hb_002534_090 Hb_002413_050--Hb_002044_070 Hb_029622_060 Hb_029622_060 Hb_002413_050--Hb_029622_060 Hb_002413_050--Hb_005675_030 Hb_002289_070 Hb_002289_070 Hb_002534_090--Hb_002289_070 Hb_001517_060 Hb_001517_060 Hb_002534_090--Hb_001517_060 Hb_000009_470 Hb_000009_470 Hb_002534_090--Hb_000009_470 Hb_011381_120 Hb_011381_120 Hb_002534_090--Hb_011381_120 Hb_169492_010--Hb_080048_030 Hb_169492_010--Hb_018487_040 Hb_001951_050 Hb_001951_050 Hb_169492_010--Hb_001951_050 Hb_002044_070--Hb_029622_060 Hb_002044_070--Hb_005675_030 Hb_002044_070--Hb_002534_090 Hb_007595_020 Hb_007595_020 Hb_002044_070--Hb_007595_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0318391 4.22604 17.3234 23.1941 0 0.0298316
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.029179 0.0459233 0 1.398 93.196

CAGE analysis